Evidence map›Paper›PMID 29961103›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

The early flowering trait of an emmer wheat accession (Triticum turgidum L. ssp. dicoccum) is associated with the cis-element of the Vrn-A3 locus.

Kazusa Nishimura, Ryuji Moriyama, Keisuke Katsura, Hiroki Saito, Rihito Takisawa, Akira Kitajima, Tetsuya Nakazaki

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Elucidating the genetic architecture of yield components in pyramidale wheat (Molecular breeding : new strategies in plant improvement · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. MIG-seq is an effective method for high-throughput genotyping in wheat (Triticum spp.).DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  7. Contemplation on wheat vernalization.Frontiers in plant science · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Pleiotropic QTL influencing spikelet number and heading date in common wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kazusa NishimuraGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan.
Ryuji MoriyamaGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan.
Keisuke KatsuraGraduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8, Saiwaicho, Fuchu, Tokyo, 183-8509, Japan.
Hiroki SaitoGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan.
Rihito TakisawaGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan.
Akira KitajimaGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan.
Tetsuya NakazakiGraduate School of Agriculture, Kyoto University, 4-2-1, Shiroyamadai, Kizugawa, 619-0218, Kyoto, Japan. nakazaki.tetsuya.4m@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-8381-3319

Funding

Japan Society for the Promotion of Science 15K07255
6 · The paper itself

Abstract

key messageWe identified a novel allele of the Vrn-A3 gene that is associated with an early flowering trait in wheat. This trait is caused by a cis-element GATA box in Vrn-A3. To identify novel flowering genes in wheat, we investigated days from germination to heading (DGH) in tetraploid wheat accessions. We found that the tetraploid variety Triticum turgidum L. ssp. dicoccum (TN26) harbors unknown genes that surpass the earliness effect of the early flowering allele Ppd-A1a harbored by TN28 (T. turgidum L. ssp. turgidum conv. pyramidale). Using recombinant inbred lines resulting from a cross between TN26 and TN28, we performed a quantitative trait locus (QTL) analysis for DGH. We identified a QTL for earliness in TN26 on chromosome 7AS, the chromosome on which Vrn-A3 is located. By sequence analysis for the Vrn-A3 locus in both TN26 and TN28, we identified a 7-bp insertion that included a cis-element GATA box sequence at the promoter region of the Vrn-A3 locus of TN26. Based on an expression analysis using sister lines for Vrn-A3, we suggest that the early flowering trait of TN26 was caused by the GATA box in Vrn-A3. In addition, we identified tetraploid wheat as a useful genetic resource for wheat breeding.

Indexed as

DNA Transposable ElementsQuantitative Trait LociAllelesCrosses, GeneticFlowersGenes, PlantPhenotypePlant BreedingPromoter Regions, GeneticTetraploidyTriticumDNA Transposable Elements

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.