Evidence map›Paper›PMID 29959391›Full record

ArticleScientific reports2018

Genetic Factors and Genotype-Environment Interactions Contribute to Variation in Melanin Production in the Fungal Pathogen Cryptococcus neoformans.

Himeshi Samarasinghe, David Aceituno-Caicedo, Massimo Cogliati, Kyung J Kwon-Chung, Volker Rickerts, Aristea Velegraki, Sevim Ackaglar, Jianping Xu

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. A Cyclam Salt as an Antifungal Agent: Interference withAntibiotics (Basel, Switzerland) · 2024
    Article
  4. Article
  5. FasterJournal of fungi (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 6 countries.

Himeshi SamarasingheDepartment of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada.
David Aceituno-CaicedoDepartment of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada.
Massimo CogliatiDepartment of Biomedical Sciences for Health, Università degli Studi di Milano, Milano, Italy.
Kyung J Kwon-ChungMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, United States.
Volker RickertsRobert Koch Institute, Berlin, Germany.
Aristea VelegrakiMedical School National and Kapodistrian University of Athens, Athens, Greece.
Sevim AckaglarUludag University, School of Medicine, Bursa, Turkey.
Jianping XuDepartment of Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada. jpxu@mcmaster.ca.ORCID 0000-0003-2915-2780
McMaster University · CABursa Uludağ Üni̇versi̇tesi̇ · TRNational and Kapodistrian University of Athens · GRNational Institute of Allergy and Infectious Diseases · USRobert Koch Institute · DEUniversity of Milan · IT

Funding

Pathogenic differences between Cryptococcus neoformans and C. gattiiZIAAI000744 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI KWON-CHUNG, KYUNG · 2010 to 2025
$10.9M
6 · The paper itself

Abstract

Cryptococcosis is a common opportunistic fungal infection that often disseminates into the central nervous system, leading to meningitis. Production of melanin pigments during infections is one of the most important virulence factors of its causal agent, the human pathogenic yeast Cryptococcus neoformans species complex. However, almost nothing is known about the patterns of variation in melanin production among clinical and environmental strains and the potential effects of such variations on virulence. In this study, we assembled a global collection of C. neoformans var. neoformans strains and investigated their patterns of melanin variation and potential contributors to such variations. Our analyses revealed that genetic differences and genotype-environment interactions explained up to 59% and 43% of the population's melanin variance respectively, depending on the tested environments. In comparison, environmental factors alone contributed relatively little to melanin variance. We also identified specific changes within the LAC1 gene, whose protein product catalyzes melanin synthesis, to be associated with variable melanin levels. This study provides fresh insights into the origin and evolution of virulence traits in fungal pathogens while highlighting the complex interplay between genetic and environmental factors that lead to phenotypic variance.

Indexed as

Gene-Environment InteractionCryptococcosisCryptococcus neoformansGenotypeHumansMelaninsPhenotypeVirulenceVirulence FactorsMelaninsVirulence Factors

Identifiers

PMID29959391
PMCPMC6026209
OpenAlexW2810207246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.