Evidence map›Paper›PMID 29956114›Full record

ArticlePlant molecular biology2018

The chromatin remodeler ZmCHB101 impacts expression of osmotic stress-responsive genes in maize.

Xiaoming Yu, Xinchao Meng, Yutong Liu, Ning Li, Ai Zhang, Tian-Jing Wang, Lili Jiang, Jinsong Pang, Xinxin Zhao, Xin Qi and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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  12. Epigenomic landscape and epigenetic regulation in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Xiaoming YuKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Xinchao MengKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Yutong LiuKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Ning LiKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Ai ZhangKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Tian-Jing WangKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Lili JiangKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Jinsong PangKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Xinxin ZhaoDepartment of Agronomy, Jilin Agricultural University, Changchun, People's Republic of China.
Xin QiDepartment of Agronomy, Jilin Agricultural University, Changchun, People's Republic of China.
Meishan ZhangDepartment of Agronomy, Jilin Agricultural University, Changchun, People's Republic of China.
Shucai WangKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China.
Bao LiuKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China. baoliu@nenu.edu.cn.
Zheng-Yi XuKey Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, People's Republic of China. xuzy100@nenu.edu.cn.
Northeast Normal University · CNJilin Agricultural University · CN

Funding

Fundamental Research Fund for the Central Universities #2412018BJ002National Key Research and Development Program of China #2016YFD0102003-2National Natural Science Foundation of China #31170259National Natural Science Foundation of China #31200231National Natural Science Foundation of China #31471565National Natural Science Foundation of China #31601311National Transgenic Maize Project #2014ZX0800305BNatural Science Foundation of Jilin Province #20150101086JCNatural Science Foundation of Jilin Province #20180101233JC
6 · The paper itself

Abstract

key messageThe maize chromatin remodeler ZmCHB101 plays an essential role in the osmotic stress response. ZmCHB101 controls nucleosome densities around transcription start sites of essential stress-responsive genes. Drought and osmotic stresses are recurring conditions that severely constrain crop production. Evidence accumulated in the model plant Arabidopsis thaliana suggests that core components of SWI/SNF chromatin remodeling complexes play essential roles in abiotic stress responses. However, how maize SWI/SNF chromatin remodeling complexes function in osmotic and drought stress responses remains unknown. Here we show that ZmCHB101, a homolog of A. thaliana SWI3D in maize, plays essential roles in osmotic and dehydration stress responses. ZmCHB101-RNA interference (RNAi) transgenic plants displayed osmotic, salt and drought stress-sensitive phenotypes. Genome-wide RNA-sequencing analysis revealed that ZmCHB101 impacts the transcriptional expression landscape of osmotic stress-responsive genes. Intriguingly, ZmCHB101 controls nucleosome densities around transcription start sites of essential stress-responsive genes. Furthermore, we identified that ZmCHB101 associates with RNA polymerase II (RNAPII) in vivo and is a prerequisite for the proper occupancy of RNAPII on the proximal regions of transcription start sites of stress-response genes. Taken together, our findings suggest that ZmCHB101 affects gene expression by remodeling chromatin states and controls RNAPII occupancies in maize under osmotic stress.

Indexed as

Gene Expression Regulation, PlantChromatin Assembly and DisassemblyDroughtsNucleosomesOsmotic PressurePlant ProteinsPlants, Genetically ModifiedRNA InterferenceRNA Polymerase IIStress, PhysiologicalZea maysNucleosomesPlant ProteinsRNA Polymerase IIAbiotic stressChromatin remodelerGene expressionMaizeNucleosome occupancyOsmotic stressTranscriptional regulation

Identifiers

PMID29956114
OpenAlexW2810404027

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.