Evidence map›Paper›PMID 29956113›Full record

ArticlePlant molecular biology2018

Expansion and diversification of the gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) family in land plants.

Rajesh K Gazara, Kanhu C Moharana, Daniel Bellieny-Rabelo, Thiago M Venancio

Abstract read
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In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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  8. Evolution and diversification of carboxylesterase-like [4+2] cyclases in aspidosperma and iboga alkaloid biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  9. Overexpression of 9-International journal of molecular sciences · 2023
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  12. Endodormancy Release Can Be Modulated by the GAFrontiers in plant science · 2021
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  13. Systematic Analysis of Gibberellin Pathway Components inInternational journal of molecular sciences · 2020
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  14. Review
  15. Convergent patterns of evolution of mitochondrial oxidative phosphorylation (OXPHOS) genes in electric fishes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
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  16. Identification of a Sidwf1 gene controlling short internode length trait in the sesame dwarf mutant dw607.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rajesh K GazaraLaboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000/P5/217, Parque Califórnia, Campos dos Goytacazes, RJ, CEP: 28013-602, Brazil.
Kanhu C MoharanaLaboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000/P5/217, Parque Califórnia, Campos dos Goytacazes, RJ, CEP: 28013-602, Brazil.
Daniel Bellieny-RabeloLaboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000/P5/217, Parque Califórnia, Campos dos Goytacazes, RJ, CEP: 28013-602, Brazil.
Thiago M VenancioLaboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000/P5/217, Parque Califórnia, Campos dos Goytacazes, RJ, CEP: 28013-602, Brazil. thiago.venancio@gmail.com.
State University of Norte Fluminense · BR

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior PhD fellowship
6 · The paper itself

Abstract

key messageHere we uncover the major evolutionary events shaping the evolution of the GID1 family of gibberellin receptors in land plants at the sequence, structure and gene expression levels. Gibberellic acid (gibberellin, GA) controls key developmental processes in the life cycle of land plants. By interacting with the GIBBERELLIN INSENSITIVE DWARF1 (GID1) receptor, GA regulates the expression of a wide range of genes through different pathways. Here we report the systematic identification and classification of GID1s in 54 plants genomes, encompassing from bryophytes and lycophytes, to several monocots and eudicots. We investigated the evolutionary relationship of GID1s using a comparative genomics framework and found strong support for a previously proposed phylogenetic classification of this family in land plants. We identified lineage-specific expansions of particular subfamilies (i.e. GID1ac and GID1b) in different eudicot lineages (e.g. GID1b in legumes). Further, we found both, shared and divergent structural features between GID1ac and GID1b subgroups in eudicots that provide mechanistic insights on their functions. Gene expression data from several species show that at least one GID1 gene is expressed in every sampled tissue, with a strong bias of GID1b expression towards underground tissues and dry legume seeds (which typically have low GA levels). Taken together, our results indicate that GID1ac retained canonical GA signaling roles, whereas GID1b specialized in conditions of low GA concentrations. We propose that this functional specialization occurred initially at the gene expression level and was later fine-tuned by mutations that conferred greater GA affinity to GID1b, including a Phe residue in the GA-binding pocket. Finally, we discuss the importance of our findings to understand the diversification of GA perception mechanisms in land plants.

Indexed as

GenomicsAmino Acid SequenceBiological EvolutionEmbryophytaExonsGibberellinsIntronsModels, MolecularMutationPhylogenyPlant Growth RegulatorsPlant ProteinsSequence AlignmentSignal Transductiongibberellic acidGibberellinsPlant Growth RegulatorsPlant ProteinsGene expression divergenceGibberellinGID1SignalingWhole-genome duplication

Identifiers

PMID29956113
OpenAlexW2949842180

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.