Evidence map›Paper›PMID 29956080›Full record

ArticleJournal of mammary gland biology and neoplasia2018

Histology and Transcriptome Profiles of the Mammary Gland across Critical Windows of Development in Sprague Dawley Rats.

Kalpana Gopalakrishnan, Susan L Teitelbaum, James Wetmur, Fabiana Manservisi, Laura Falcioni, Simona Panzacchi, Federica Gnudi, Fiorella Belpoggi, Jia Chen

Abstract read
In one paragraph

Article in Journal of mammary gland biology and neoplasia, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Kalpana GopalakrishnanDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, Box 1057, 1 Gustave Levy Place, New York, NY, 10029, USA.
Susan L TeitelbaumDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, Box 1057, 1 Gustave Levy Place, New York, NY, 10029, USA.
James WetmurDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, Box 1054, 1 Gustave Levy Place, New York, NY, 10029, USA.
Fabiana ManservisiCesare Maltoni Cancer Research Centre, Ramazzini Institute, Bentivoglio, Bologna, Italy.
Laura FalcioniCesare Maltoni Cancer Research Centre, Ramazzini Institute, Bentivoglio, Bologna, Italy.
Simona PanzacchiCesare Maltoni Cancer Research Centre, Ramazzini Institute, Bentivoglio, Bologna, Italy.
Federica GnudiCesare Maltoni Cancer Research Centre, Ramazzini Institute, Bentivoglio, Bologna, Italy.
Fiorella BelpoggiCesare Maltoni Cancer Research Centre, Ramazzini Institute, Bentivoglio, Bologna, Italy.
Jia ChenDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, Box 1057, 1 Gustave Levy Place, New York, NY, 10029, USA. jia.chen@mssm.edu.ORCID 0000-0001-6597-8577
Istituto Ramazzini · ITIcahn School of Medicine at Mount Sinai · US

Funding

The Mount Sinai Transdisciplinary Center on Early Environmental ExposuresP30ES023515 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Manish Arora · 2014 to 2026
$21.3M
MicroRNA & Breast Cancer: Functional Characterization in a Population-Based StudyR01CA172460 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHEN, JIA · 2013 to 2017
$3.2M
Dietary Methyl Content, Epigenetics and Breast CancerR01CA109753 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHEN, JIA · 2006 to 2010
$2.9M
Breast Cancer Genomics in Windows of Susceptibility to Endocrine DisruptorsU01ES019459 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHEN, JIA, TEITELBAUM, SUSAN L · 2010 to 2014
$2.6M
NCI NIH HHS R01 CA109753NCI NIH HHS R01 CA172460NIEHS NIH HHS P30 ES023515NIEHS NIH HHS U01 ES019459
6 · The paper itself

Abstract

Breast development occurs through well-defined stages representing 'windows of susceptibility' to adverse environmental exposures that potentially modify breast cancer risk. Systematic characterization of morphology and transcriptome during normal breast development lays the foundation of our understanding of cancer etiology. We examined mammary glands in female Sprague Dawley rats across six developmental stages - pre-pubertal, peri-pubertal, pubertal, lactation, adult parous and adult nulliparous. We investigated histology by Hematoxylin and Eosin and Mallory's Trichrome stain, proliferative and apoptotic rate by immunohistochemistry and whole-transcriptome by microarrays. We identified differentially expressed genes between adjacent developmental stages by linear models, underlying pathways by gene ontology analysis and gene networks and hubs active across developmental stages by coexpression network analysis. Mammary gland development was associated with large-scale changes in the transcriptome; particularly from pre-pubertal to peri-pubertal period and the lactation period were characterized by distinct patterns of gene expression with unique biological functions such as immune processes during pre-pubertal development and cholesterol biosynthesis during lactation. These changes were reflective of the shift in mammary gland histology, from a rudimentary organ during early stages to a secretory organ during lactation followed by regression with age. Hub genes within mammary gene networks included metabolic genes such as Pparg during the pre-pubertal stage and tight junction-related genes claudins and occludins in lactating mammary glands. Transcriptome profile paired with histology enhanced our understanding of mammary development, which is fundamental in understanding the etiologic mechanism of breast cancer, especially pertaining to windows of susceptibility to environmental exposures that may alter breast cancer risk.

Indexed as

AnimalsBreast NeoplasmsClaudinsFemaleGene Expression ProfilingLactationMammary Glands, AnimalOccludinRatsRats, Sprague-DawleyTight JunctionsTranscriptomeClaudinsOccludinBreast cancerCoexpression networkMammary gland developmentMammary gland histologyMammary gland transcriptomeSprague Dawley rat

Identifiers

PMID29956080
PMCPMC6103804
OpenAlexW2810353456

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.