Evidence map›Paper›PMID 29955147›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2018

Alternative PDGFD rearrangements in dermatofibrosarcomas protuberans without PDGFB fusions.

Bérengère Dadone-Montaudié, Laurent Alberti, Adeline Duc, Lucile Delespaul, Tom Lesluyes, Gaëlle Pérot, Agnès Lançon, Sandrine Paindavoine, Ilaria Di Mauro, Jean-Yves Blay and 16 more

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In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
  2. Review
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  12. Review
  13. Molecular testing of soft tissue tumors.Diagnostic cytopathology · 2023
    Review
  14. Article
  15. Article
  16. Detection of sarcoma fusions by a next-generation sequencing based-ligation-dependent multiplex RT-PCR assay.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  17. Article
  18. PDGFB RNA in situ hybridization for the diagnosis of dermatofibrosarcoma protuberans.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  19. Update on Superficial Spindle Cell Mesenchymal Tumors in Children.Dermatopathology (Basel, Switzerland) · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 1 country.

Bérengère Dadone-MontaudiéLaboratory of Solid Tumors Genetics, Institute for Research on Cancer and Aging of Nice (IRCAN) CNRS UMR 7284/INSERM U1081, Université Côte d'Azur, Centre Hospitalier Universitaire de Nice, Nice, France.
Laurent AlbertiCancer Research Center of Lyon, Université Claude Bernard Lyon 1, CNRS 5286, INSERM U1052, Lyon, France.
Adeline DucDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
Lucile DelespaulINSERM U1218 ACTION, Bordeaux, France.
Tom LesluyesINSERM U1218 ACTION, Bordeaux, France.
Gaëlle PérotDepartment of Pathology, Institut Bergonié, Bordeaux, France.
Agnès LançonDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
Sandrine PaindavoineDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
Ilaria Di MauroLaboratory of Solid Tumors Genetics, Institute for Research on Cancer and Aging of Nice (IRCAN) CNRS UMR 7284/INSERM U1081, Université Côte d'Azur, Centre Hospitalier Universitaire de Nice, Nice, France.
Jean-Yves BlayCancer Research Center of Lyon, Université Claude Bernard Lyon 1, CNRS 5286, INSERM U1052, Lyon, France.
Arnaud de la FouchardièreDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
Frédéric ChibonINSERM U1218 ACTION, Bordeaux, France.ORCID http://orcid.org/0000-0002-6548-2181
Marie KaranianDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
Gaëtan MacGroganDepartment of Pathology, Institut Bergonié, Bordeaux, France.
Valérie KubiniekLaboratory of Solid Tumors Genetics, Institute for Research on Cancer and Aging of Nice (IRCAN) CNRS UMR 7284/INSERM U1081, Université Côte d'Azur, Centre Hospitalier Universitaire de Nice, Nice, France.
Frédérique KeslairLaboratory of Solid Tumors Genetics, Institute for Research on Cancer and Aging of Nice (IRCAN) CNRS UMR 7284/INSERM U1081, Université Côte d'Azur, Centre Hospitalier Universitaire de Nice, Nice, France.
Nathalie Cardot-LecciaCentral Laboratory of Pathology, Centre Hospitalier Universitaire de Nice, Nice, France.
Audrey MichotDepartment of Surgery, Institut Bergonié, Bordeaux, France.
Virginie PerrinDepartment of Translational Research and Innovation, Centre Léon Bérard, Lyon, France.
Yanis ZekriDepartment of Translational Research and Innovation, Centre Léon Bérard, Lyon, France.
Jean-Michel CoindreUniversity of Bordeaux, Bordeaux, France.
Franck TirodeCancer Research Center of Lyon, Université Claude Bernard Lyon 1, CNRS 5286, INSERM U1052, Lyon, France.ORCID http://orcid.org/0000-0003-4731-7817
Florence PedeutourLaboratory of Solid Tumors Genetics, Institute for Research on Cancer and Aging of Nice (IRCAN) CNRS UMR 7284/INSERM U1081, Université Côte d'Azur, Centre Hospitalier Universitaire de Nice, Nice, France.
Dominique Ranchère-VinceDepartment of Biopathology, Centre Léon Bérard, Lyon, France.
François Le LoarerUniversity of Bordeaux, Bordeaux, France.
Daniel PissalouxCancer Research Center of Lyon, Université Claude Bernard Lyon 1, CNRS 5286, INSERM U1052, Lyon, France. daniel.pissaloux@lyon.unicancer.fr.
Centre Léon Bérard · FRCentre National de la Recherche Scientifique · FRUniversité Claude Bernard Lyon 1 · FRUniversité de Bordeaux · FRInstitut Bergonié · FRCentre Hospitalier Universitaire de Nice · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dermatofibrosarcoma protuberans is underlined by recurrent collagen type I alpha 1 chain-platelet-derived growth factor B chain (COL1A1-PDGFB) fusions but ~ 4% of typical dermatofibrosarcoma protuberans remain negative for this translocation in routine molecular screening. We investigated a series of 21 cases not associated with the pathognomonic COL1A1-PDGFB fusion on routine fluorescence in situ hybridization (FISH) testing. All cases displayed morphological and clinical features consistent with the diagnosis of dermatofibrosarcoma protuberans. RNA-sequencing analysis was successful in 20 cases. The classical COL1A1-PDGFB fusion was present in 40% of cases (n = 8/20), and subsequently confirmed with a COL1A1 break-apart FISH probe in all but one case (n = 7/8). 55% of cases (n = 11/20) displayed novel PDGFD rearrangements; PDGFD being fused either to the 5' part of COL6A3 (2q37.3) (n = 9/11) or EMILIN2 (18p11) (n = 2/11). All rearrangements led to in-frame fusion transcripts and were confirmed at genomic level by FISH and/or array-comparative genomic hybridization. PDGFD-rearranged dermatofibrosarcoma protuberans presented clinical outcomes similar to typical dermatofibrosarcoma protuberans. Notably, the two EMILIN2-PDGFD cases displayed fibrosarcomatous transformation and homozygous deletions of CDKN2A at genomic level. We report the first recurrent molecular variant of dermatofibrosarcoma protuberans involving PDGFD, which functionally mimic bona fide COL1A1-PDGFB fusions, leading presumably to a similar autocrine loop-stimulating PDGFRB. This study also emphasizes that COL1A1-PDGFB fusions can be cytogenetically cryptic on FISH testing in a subset of cases, thereby representing a diagnostic pitfall that pathologists should be aware of.

Indexed as

AdultAgedChild, PreschoolCollagen Type I, alpha 1 ChainDermatofibrosarcomaFemaleGene RearrangementHumansLymphokinesMaleMiddle AgedOncogene Proteins, FusionPlatelet-Derived Growth FactorProto-Oncogene Proteins c-sisSkin NeoplasmsCOL1A1 protein, humanCOLIA1-PDGFB fusion protein, humanCollagen Type I, alpha 1 ChainLymphokinesOncogene Proteins, FusionPDGFD protein, humanPlatelet-Derived Growth FactorProto-Oncogene Proteins c-sis

Identifiers

PMID29955147
OpenAlexW2809972012

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.