Evidence map›Paper›PMID 29955043›Full record

ArticleNature communications2018

Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

Alexander Vogel, Rainer Schwacke, Alisandra K Denton, Björn Usadel, Julien Hollmann, Karsten Fischer, Anthony Bolger, Maximilian H-W Schmidt, Marie E Bolger, Heidrun Gundlach and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
28.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 195 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Alexander VogelInstitute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg 3, RWTH Aachen University, Aachen, 52074, Germany.ORCID http://orcid.org/0000-0002-4282-5268
Rainer SchwackeInstitute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, 52428, Germany.
Alisandra K DentonInstitute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg 3, RWTH Aachen University, Aachen, 52074, Germany.
Björn UsadelInstitute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg 3, RWTH Aachen University, Aachen, 52074, Germany.ORCID http://orcid.org/0000-0003-0921-8041
Julien HollmannDepartment of Arctic and Marine Biology, UiT The Arctic University of Norway, Biologibygget, Framstredet 39, Tromsø, 9037, Norway.ORCID http://orcid.org/0000-0002-3900-9833
Karsten FischerDepartment of Arctic and Marine Biology, UiT The Arctic University of Norway, Biologibygget, Framstredet 39, Tromsø, 9037, Norway.
Anthony BolgerInstitute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg 3, RWTH Aachen University, Aachen, 52074, Germany.
Maximilian H-W SchmidtInstitute for Botany and Molecular Genetics, BioEconomy Science Center, Worringer Weg 3, RWTH Aachen University, Aachen, 52074, Germany.
Marie E BolgerInstitute for Bio- and Geosciences (IBG-2: Plant Sciences), Forschungszentrum Jülich, Wilhelm Johnen Straße, Jülich, 52428, Germany.
Heidrun GundlachHelmholtz Zentrum München (HMGU), Plant Genome and Systems Biology (PGSB), Ingolstädter Landstraße 1, Neuherberg, 85764, Germany.ORCID http://orcid.org/0000-0002-6757-0943
Klaus F X MayerHelmholtz Zentrum München (HMGU), Plant Genome and Systems Biology (PGSB), Ingolstädter Landstraße 1, Neuherberg, 85764, Germany.ORCID http://orcid.org/0000-0001-6484-1077
Hanna Weiss-SchneeweissDepartment of Botany and Biodiversity Research, Faculty Center Biodiversity, University of Vienna, Rennweg 14, Vienna, 1030, Austria.
Eva M TemschDepartment of Botany and Biodiversity Research, Faculty Center Biodiversity, University of Vienna, Rennweg 14, Vienna, 1030, Austria.
Kirsten KrauseDepartment of Arctic and Marine Biology, UiT The Arctic University of Norway, Biologibygget, Framstredet 39, Tromsø, 9037, Norway. kirsten.krause@uit.no.ORCID http://orcid.org/0000-0001-9739-2466
Forschungszentrum Jülich · DERWTH Aachen University · DEUiT The Arctic University of Norway · NOHelmholtz Zentrum München · DEUniversity of Vienna · ATHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A parasitic lifestyle, where plants procure some or all of their nutrients from other living plants, has evolved independently in many dicotyledonous plant families and is a major threat for agriculture globally. Nevertheless, no genome sequence of a parasitic plant has been reported to date. Here we describe the genome sequence of the parasitic field dodder, Cuscuta campestris. The genome contains signatures of a fairly recent whole-genome duplication and lacks genes for pathways superfluous to a parasitic lifestyle. Specifically, genes needed for high photosynthetic activity are lost, explaining the low photosynthesis rates displayed by the parasite. Moreover, several genes involved in nutrient uptake processes from the soil are lost. On the other hand, evidence for horizontal gene transfer by way of genomic DNA integration from the parasite's hosts is found. We conclude that the parasitic lifestyle has left characteristic footprints in the C. campestris genome.

Indexed as

Gene DuplicationGene Expression Regulation, PlantGenome, PlantHost-Parasite InteractionsCarrier ProteinsCuscutaGene DeletionGene OntologyKaryotypeMetabolic Networks and PathwaysMolecular Sequence AnnotationPelargoniumPhotosynthesisPhylogenyPlant ProteinsCarrier ProteinsPlant Proteins

Identifiers

PMID29955043
PMCPMC6023873
OpenAlexW2809381822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.