Evidence map›Paper›PMID 29954843›Full record

ArticleG3 (Bethesda, Md.)2018

RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.

Emily Humble, Kanchon K Dasmahapatra, Alvaro Martinez-Barrio, Inês Gregório, Jaume Forcada, Ann-Christin Polikeit, Simon D Goldsworthy, Michael E Goebel, Jörn Kalinowski, Jochen B W Wolf and 1 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Reply to Gaudry et al.: Cross-validation is necessary for the identification of pseudogenes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Evolution of pinniped UCP1 is not linked to aquatic life but to neonatal thermogenesis and body size.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Exploring the Phylogeography of AncientInternational journal of molecular sciences · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 5 countries.

Emily HumbleDepartment of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501 Bielefeld, Germany emily.lhumble@gmail.com.ORCID 0000-0001-6841-1269
Kanchon K DasmahapatraDepartment of Biology, University of York, Heslington, York, YO10 5DD, United Kingdom.ORCID 0000-0002-2840-7019
Alvaro Martinez-BarrioScience for Life Laboratories and Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.
Inês GregórioDepartment of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501 Bielefeld, Germany.
Jaume ForcadaBritish Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 OET, United Kingdom.ORCID 0000-0002-2115-0150
Ann-Christin PolikeitDepartment of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501 Bielefeld, Germany.
Simon D GoldsworthySouth Australian Research and Development Institute, 2 Hamra Avenue, West Beach, South Australia, 5024, Australia.ORCID 0000-0003-4988-9085
Michael E GoebelAntarctic Ecosystem Research Division, SWFSC, NMFS, NOAA, La Jolla, California 92037-1023 USA.
Jörn KalinowskiCentrum für Biotechnologie, CeBiTec, University of Bielefeld, Universitätsstr. 27, 33615 Bielefeld, Germany.ORCID 0000-0002-9052-1998
Jochen B W WolfDivision of Evolutionary Biology, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinstried, Germany.ORCID 0000-0002-2958-5183
Joseph I HoffmanDepartment of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501 Bielefeld, Germany.ORCID 0000-0001-5895-8949
Bielefeld University · DEBritish Antarctic Survey · GBNOAA National Marine Fisheries Service Southwest Fisheries Science Center · USScience for Life Laboratory · SESouth Australian Research and Development Institute · AUUniversity of York · GBUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in high throughput sequencing have transformed the study of wild organisms by facilitating the generation of high quality genome assemblies and dense genetic marker datasets. These resources have the potential to significantly advance our understanding of diverse phenomena at the level of species, populations and individuals, ranging from patterns of synteny through rates of linkage disequilibrium (LD) decay and population structure to individual inbreeding. Consequently, we used PacBio sequencing to refine an existing Antarctic fur seal (

Indexed as

GenomeInbreedingLinkage DisequilibriumAnimalsFur SealsPolymorphism, Single Nucleotidecomparative genomicsgenomic inbreeding coefficientlinkage disequilibrium (LD)PacBio sequencingpopulation structureRAD sequencingsingle nucleotide polymorphism (SNP)

Identifiers

PMID29954843
PMCPMC6071602
OpenAlexW2796016604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.