Evidence map›Paper›PMID 29954325›Full record

ArticleBMC genomics2018

Identification of differentially expressed genes and pathways in mice exposed to mixed field neutron/photon radiation.

Constantinos G Broustas, Andrew D Harken, Guy Garty, Sally A Amundson

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Transcriptomics for radiation biodosimetry: progress and challenges.International journal of radiation biology · 2023
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. The transcriptomic revolution and radiation biology.International journal of radiation biology · 2022
    Article
  13. Article
  14. Article
  15. Neutron Radiobiology and Dosimetry.Radiation research · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Constantinos G BroustasCenter for Radiological Research, Columbia University Medical Center, 630 West 168th Street, New York, NY, 10032, USA. Cgb2117@cumc.columbia.edu.ORCID http://orcid.org/0000-0001-7169-807X
Andrew D HarkenRadiological Research Accelerator Facility, Columbia University, Irvington, NY, 10533, USA.
Guy GartyRadiological Research Accelerator Facility, Columbia University, Irvington, NY, 10533, USA.
Sally A AmundsonCenter for Radiological Research, Columbia University Medical Center, 630 West 168th Street, New York, NY, 10032, USA.
Columbia University · USColumbia University Irving Medical Center · US

Funding

Sample Engineering CoreU19AI067773 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FORNACE, ALBERT J · 2005 to 2024
$105.4M
TR&D 3P41EB002033 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BRENNER, DAVID JONATHAN · 2003 to 2018
$17.0M
National Institute of Allergy and Infectious Diseases U19AI067773National Institute of Biomedical Imaging and Bioengineering 5P41EB-002033NIAID NIH HHS U19 AI067773NIBIB NIH HHS P41 EB002033
6 · The paper itself

Abstract

backgroundRadiation exposure due to the detonation of an improvised nuclear device remains a major security concern. Radiation from such a device involves a combination of photons and neutrons. Although photons will make the greater contribution to the total dose, neutrons will certainly have an impact on the severity of the exposure as they have high relative biological effectiveness.

resultsWe investigated the gene expression signatures in the blood of mice exposed to 3 Gy x-rays, 0.75 Gy of neutrons, or to mixed field photon/neutron with the neutron fraction contributing 5, 15%, or 25% of a total 3 Gy radiation dose. Gene ontology and pathway analysis revealed that genes involved in protein ubiquitination pathways were significantly overrepresented in all radiation doses and qualities. On the other hand, eukaryotic initiation factor 2 (EIF2) signaling pathway was identified as one of the top 10 ranked canonical pathways in neutron, but not pure x-ray, exposures. In addition, the related mTOR and regulation of EIF4/p70S6K pathways were also significantly underrepresented in the exposures with a neutron component, but not in x-ray radiation. The majority of the changed genes in these pathways belonged to the ribosome biogenesis and translation machinery and included several translation initiation factors (e.g. Eif2ak4, Eif3f), as well as 40S and 60S ribosomal subunits (e.g. Rsp19, Rpl19, Rpl27). Many of the differentially downregulated ribosomal genes (e.g. RPS19, RPS28) have been causally associated with human bone marrow failure syndromes and hematologic malignancies. We also observed downregulation of transfer RNA processes, in the neutron-only exposure (p < 0.005). Ingenuity Pathway Analysis (p < 0.05) of differentially expressed genes predicted significantly suppressed activity of the upstream regulators c-Myc and Mycn, transcription factors known to control ribosome biogenesis.

conclusionsWe describe the gene expression profile of mouse blood following exposure to mixed field neutron/photon irradiation. We have discovered that pathways related to protein translation are significantly underrepresented in the exposures containing a neutron component. Our results highlight the significance of neutron exposures that even the smallest percentage can have profound biological effects that will affect medical management and treatment decisions in case of a radiological emergency.

Indexed as

NeutronsAnimalsGene Expression RegulationGene OntologyMaleMetabolic Networks and PathwaysMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisPhotonsRadiation DosageSignal TransductionTranscriptomeX-RaysGene expressionMixed field neutron/photonMouse bloodRadiation biodosimetry

Identifiers

PMID29954325
PMCPMC6027792
OpenAlexW2810868414

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.