Evidence map›Paper›PMID 29954180›Full record

ArticleJournal of the American Chemical Society2018

Paradigm Shift for Radical S-Adenosyl-l-methionine Reactions: The Organometallic Intermediate Ω Is Central to Catalysis.

Amanda S Byer, Hao Yang, Elizabeth C McDaniel, Venkatesan Kathiresan, Stella Impano, Adrien Pagnier, Hope Watts, Carly Denler, Anna L Vagstad, Jörn Piel and 9 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 93 citations in OpenAlex.

  1. The radical SAM enzyme EpeE exhibits distinct site reactivity during the biosynthesis of the RiPP natural product epipeptide.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Mechanism of controlled radical initiation in radical SAM GTP 3',8-cyclase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Review
  5. Review
  6. Chemical Antiquity in Metabolism.Accounts of chemical research · 2024
    Article
  7. Article
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  11. Cluster-selectiveChemical science · 2023
    Article
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  13. Review
  14. Development of aniScience · 2023
    Article
  15. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Amanda S ByerDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Hao YangDepartment of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States.
Elizabeth C McDanielDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Venkatesan KathiresanDepartment of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States.
Stella ImpanoDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Adrien PagnierDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Hope WattsDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Carly DenlerDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Anna L VagstadInstitute of Microbiology , Eidgenössische Technische Hochschule Zürich , Vladimir-Prelog-Weg 4 , Zürich 8093 , Switzerland.
Jörn PielInstitute of Microbiology , Eidgenössische Technische Hochschule Zürich , Vladimir-Prelog-Weg 4 , Zürich 8093 , Switzerland.
Kaitlin S DuscheneDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Eric M ShepardDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Thomas P ShieldsCassia, LLC , 3030 Bunker Hill Street, Ste. 214 , San Diego , California 92109 , United States.
Lincoln G ScottCassia, LLC , 3030 Bunker Hill Street, Ste. 214 , San Diego , California 92109 , United States.
Edward A LillaDepartment of Biochemistry , Duke University Medical Center , Durham , North Carolina 27710 , United States.
Kenichi YokoyamaDepartment of Biochemistry , Duke University Medical Center , Durham , North Carolina 27710 , United States.ORCID 0000-0001-5625-469X
William E BroderickDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.
Brian M HoffmanDepartment of Chemistry , Northwestern University , Evanston , Illinois 60208 , United States.ORCID 0000-0002-3100-0746
Joan B BroderickDepartment of Chemistry & Biochemistry , Montana State University , Bozeman , Montana 59717 , United States.ORCID 0000-0001-7057-9124
Montana State University · USNorthwestern University · USCassia (United States) · USDuke Medical Center · USETH Zurich · CH

Funding

Coboglobins-Cobalt-Substituted Hemoglobins and MyoglobinR01GM111097 · NIGMS · NORTHWESTERN UNIVERSITY · PI HOFFMAN, BRIAN M · 2014 to 2025
$6.7M
Iron-Sulfur Clusters in Biological Radical GenerationR01GM054608 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI BRODERICK, JOAN B · 2001 to 2018
$4.7M
Radical SAM Enzymes: Radical Mechanisms Central to BiologyR35GM131889 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Joan B Broderick · 2019 to 2026
$3.0M
Mechanism of cofactor biosynthesis required for chronic bacterial infectionR01GM112838 · NIGMS · DUKE UNIVERSITY · PI YOKOYAMA, KENICHI · 2015 to 2023
$2.8M
SPECTROSCOPIC STUDIES OF PYRUVATE FORMATE LYASE ACTIVASER29GM054608 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BRODERICK, JOAN B. · 1997 to 2000
$102k
NIGMS NIH HHS R01 GM054608NIGMS NIH HHS R01 GM111097NIGMS NIH HHS R01 GM112838NIGMS NIH HHS R29 GM054608NIGMS NIH HHS R35 GM131889
6 · The paper itself

Abstract

Radical S-adenosyl-l-methionine (SAM) enzymes comprise a vast superfamily catalyzing diverse reactions essential to all life through homolytic SAM cleavage to liberate the highly reactive 5'-deoxyadenosyl radical (5'-dAdo·). Our recent observation of a catalytically competent organometallic intermediate Ω that forms during reaction of the radical SAM (RS) enzyme pyruvate formate-lyase activating-enzyme (PFL-AE) was therefore quite surprising, and led to the question of its broad relevance in the superfamily. We now show that Ω in PFL-AE forms as an intermediate under a variety of mixing order conditions, suggesting it is central to catalysis in this enzyme. We further demonstrate that Ω forms in a suite of RS enzymes chosen to span the totality of superfamily reaction types, implicating Ω as essential in catalysis across the RS superfamily. Finally, EPR and electron nuclear double resonance spectroscopy establish that Ω involves an Fe-C5' bond between 5'-dAdo· and the [4Fe-4S] cluster. An analogous organometallic bond is found in the well-known adenosylcobalamin (coenzyme B

Indexed as

AcetyltransferasesBacteriaBiocatalysisCobamidesDeoxyadenosinesElectron Spin Resonance SpectroscopyEnzymesEscherichia coliModels, MolecularProtein ConformationS-Adenosylmethionine5'-deoxyadenosineAcetyltransferasescobamamideCobamidesDeoxyadenosinesEnzymespyruvate formate-lyase activating enzymeS-Adenosylmethionine

Identifiers

PMID29954180
PMCPMC6053644
OpenAlexW2810954665

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.