Evidence map›Paper›PMID 29953492›Full record

ArticlePloS one2018

SIMPLE binds specifically to PI4P through SIMPLE-like domain and participates in protein trafficking in the trans-Golgi network and/or recycling endosomes.

Yasuhiro Moriwaki, Yuho Ohno, Tomohiro Ishii, Yuki Takamura, Yuko Kita, Kazuhiko Watabe, Kazunori Sango, Shoutaro Tsuji, Hidemi Misawa

RetractedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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  5. Review
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yasuhiro MoriwakiDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.ORCID 0000-0001-9533-0421
Yuho OhnoDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.
Tomohiro IshiiDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.
Yuki TakamuraDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.
Yuko KitaDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.
Kazuhiko WatabeLaboratory for Neurodegenerative Pathology, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo, Japan.
Kazunori SangoDiabetic Neuropathy Project, Tokyo Metropolitan Institute of Medical Science, Setagaya-ku, Tokyo, Japan.
Shoutaro TsujiMolecular Diagnostics Project, Kanagawa Cancer Center Research Institute, Yokohama, Kanagawa, Japan.
Hidemi MisawaDivision of Pharmacology, Faculty of Pharmacy, Keio University, Minato-ku, Tokyo, Japan.
Keio University · JPTokyo Metropolitan Institute of Medical Science · JPKanagawa Prefectural Hospital Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small integral membrane protein of the lysosome/late endosome (SIMPLE) is a 161-amino acid cellular protein that contains a characteristic C-terminal domain known as the SIMPLE-like domain (SLD), which is well conserved among species. Several studies have demonstrated that SIMPLE localizes to the trans-Golgi network (TGN), early endosomes, lysosomes, multivesicular bodies, aggresomes and the plasma membrane. However, the amino acid regions responsible for its subcellular localization have not yet been identified. The SLD resembles the FYVE domain, which binds phosphatidylinositol (3)-phosphate (PI3P) and determines the subcellular localization of FYVE domain-containing proteins. In the present study, we have found that SIMPLE binds specifically to PI4P through its SLD. SIMPLE co-localized with PI4P and Rab11, a marker for recycling endosomes (REs, organelles enriched in PI4P) in both the IMS32 mouse Schwann cell line and Hela cells. Sucrose density-gradient centrifugation revealed that SIMPLE co-fractionated with syntaxin-6 (a TGN marker) and Rab11. We have also found that SIMPLE knockdown impeded recycling of transferrin and of transferrin receptor. Our overall results indicate that SIMPLE may regulate protein trafficking physiologically by localizing to the TGN and/or REs by binding PI4P.

Indexed as

AnimalsCell Line, TransformedDNA-Binding ProteinsEndosomesHeLa CellsHumansMiceNuclear ProteinsPhosphatidylinositol PhosphatesProtein Domainsrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsSchwann CellsTranscription Factorstrans-Golgi NetworkDNA-Binding ProteinsLITAF protein, humanLitaf protein, mouseNuclear Proteinsphosphatidylinositol 4-phosphatePhosphatidylinositol Phosphatesrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsTranscription Factors

Identifiers

PMID29953492
PMCPMC6023223
OpenAlexW2810641936

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.