Evidence map›Paper›PMID 29953466›Full record

ArticlePloS one2018

Genome wide association study for gray leaf spot resistance in tropical maize core.

Maurício Carlos Kuki, Carlos Alberto Scapim, Evandrei Santos Rossi, Claudete Aparecida Mangolin, Antônio Teixeira do Amaral Júnior, Ronald José Barth Pinto

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  5. Quantitative trait locus analysis of gray leaf spot resistance in the maize IBM Syn10 DH population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Maurício Carlos KukiDepartamento de Agronomia, Universidade Estadual de Maringá, Maringá, Paraná, Brasil.ORCID 0000-0002-6401-2313
Carlos Alberto ScapimDepartamento de Agronomia, Universidade Estadual de Maringá, Maringá, Paraná, Brasil.
Evandrei Santos RossiDepartamento de Agronomia, Universidade Estadual de Maringá, Maringá, Paraná, Brasil.
Claudete Aparecida MangolinDepartamento de Agronomia, Universidade Estadual de Maringá, Maringá, Paraná, Brasil.
Antônio Teixeira do Amaral JúniorLaboratório de Melhoramento Genético Vegetal, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, Rio de Janeiro, Brasil.
Ronald José Barth PintoDepartamento de Agronomia, Universidade Estadual de Maringá, Maringá, Paraná, Brasil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gray leaf spot is a maize foliar disease with worldwide distribution and can drastically reduce the production in susceptible genotypes. Published works indicate that resistance to gray leaf spot is a complex trait controlled by multiple genes, with additive effect and influenced by environment. The aim of this study was to identify genomic regions, including putative genes, associated with resistance to gray leaf spot under natural conditions of disease occurrence. A genome wide association study was conducted with 355,972 single nucleotide polymorphism markers on a phenotypic data composed by 157 tropical maize inbred lines, evaluated at Maringá -Brazil. Seven single nucleotide polymorphisms were significantly associated with gray leaf spot, some of which were localized to previously reported quantitative trait loci regions. Three gene models linked to the associated single nucleotide polymorphism were expressed at flowering time and tissue related with gray leaf spot infection, explaining a considerable proportion of the phenotypic variance, ranging from 0.34 to 0.38. The gene model GRMZM2G073465 (bin 10.07) encodes a cysteine protease3 protein, gene model GRMZM2G007188 (bin 1.02) expresses a rybosylation factor-like protein and the gene model GRMZM2G476902 (bin 4.08) encodes an armadillo repeat protein. These three proteins are related with plant defense pathway. Once these genes are validated in next studies, they will be useful for marker-assisted selection and can help improve the understanding of maize resistance to gray leaf spot.

Indexed as

Disease ResistanceGenome-Wide Association StudyModels, GeneticPhenotypePlant DiseasesPlant ProteinsPolymorphism, Single NucleotideQuantitative Trait LociZea maysPlant Proteins

Identifiers

PMID29953466
PMCPMC6023161

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.