Evidence map›Paper›PMID 29949762›Full record

ArticleCell reports2018

An RNA-Binding Multimer Specifies Nematode Sperm Fate.

Scott T Aoki, Douglas F Porter, Aman Prasad, Marvin Wickens, Craig A Bingman, Judith Kimble

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Functional significance of PUF partnerships inbioRxiv : the preprint server for biology · 2023
    Article
  5. DLC-1 facilitates germ granule assembly inMolecular biology of the cell · 2022
    Article
  6. Sex Determination in Nematode Germ Cells.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. TheG3 (Bethesda, Md.) · 2019
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Scott T AokiDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Douglas F PorterDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Aman PrasadDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Marvin WickensDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Craig A BingmanDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: jekimble@wisc.edu.
University of Wisconsin–Madison · USHoward Hughes Medical Institute · US

Funding

INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
The Transmembrane Protein CenterU54GM094584 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 2010 to 2014
$4.6M
Enzyme Discovery for Natural Product BiosynthesisU01GM098248 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PHILLIPS, GEORGE NEAL · 2011 to 2015
$2.8M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
The mechanics and dynamics of RNP granulesK99HD081208 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI AOKI, SCOTT T · 2015 to 2016
$202k
C. elegans RNA regulatory protein complexes that control germ cell fateF32HD071692 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI AOKI, SCOTT T · 2012 to 2014
$176k
Howard Hughes Medical InstituteNICHD NIH HHS F32 HD071692NICHD NIH HHS K99 HD081208NIGMS NIH HHS R01 GM050942NIGMS NIH HHS T32 GM008692NIGMS NIH HHS U01 GM094622NIGMS NIH HHS U01 GM098248NIGMS NIH HHS U54 GM094584NIH HHS S10 OD012289
6 · The paper itself

Abstract

FOG-3 is a master regulator of sperm fate in Caenorhabditis elegans and homologous to Tob/BTG proteins, which in mammals are monomeric adaptors that recruit enzymes to RNA binding proteins. Here, we determine the FOG-3 crystal structure and in vitro demonstrate that FOG-3 forms dimers that can multimerize. The FOG-3 multimeric structure has a basic surface potential, suggestive of binding nucleic acid. Consistent with that prediction, FOG-3 binds directly to nearly 1,000 RNAs in nematode spermatogenic germ cells. Most binding is to the 3' UTR, and most targets (94%) are oogenic mRNAs, even though assayed in spermatogenic cells. When tethered to a reporter mRNA, FOG-3 represses its expression. Together these findings elucidate the molecular mechanism of sperm fate specification and reveal the evolution of a protein from monomeric to multimeric form with acquisition of a distinct mode of mRNA repression.

Indexed as

3' Untranslated RegionsAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDimerizationMaleProtein BindingProtein MultimerizationRNARNA Processing, Post-TranscriptionalSpermatogenesisSpermatozoa3' Untranslated RegionsCaenorhabditis elegans ProteinsFOG-3 protein, C elegansRNAFOG-3multimerizationprotein evolutionRNA binding proteinsperm fateTob/BTG

Identifiers

PMID29949762
PMCPMC6066285
OpenAlexW2951220726

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.