Evidence map›Paper›PMID 29948658›Full record

ArticlePlant molecular biology2018

Genome-wide analysis of the invertase gene family from maize.

Sheila Juárez-Colunga, Cristal López-González, Norma Cecilia Morales-Elías, Julio Armando Massange-Sánchez, Samuel Trachsel, Axel Tiessen

Abstract read
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In one paragraph

Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 67 citations in OpenAlex.

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  11. Physiological and sucrose metabolic responses to waterlogging stress in balloon flower (Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  12. Dynamics of the sucrose metabolism and related gene expression in tomato fruits under water deficit.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
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  19. Analysis of Global Gene Expression in Maize (Plants (Basel, Switzerland) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sheila Juárez-ColungaDepartamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Km 9.6 Libramiento Norte, Irapuato, C.P. 36824, Guanajuato, Mexico.ORCID http://orcid.org/0000-0001-5136-4515
Cristal López-GonzálezDepartamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Km 9.6 Libramiento Norte, Irapuato, C.P. 36824, Guanajuato, Mexico.ORCID http://orcid.org/0000-0002-8539-6643
Norma Cecilia Morales-ElíasDepartamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Km 9.6 Libramiento Norte, Irapuato, C.P. 36824, Guanajuato, Mexico.ORCID http://orcid.org/0000-0002-1686-7069
Julio Armando Massange-SánchezDepartamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Km 9.6 Libramiento Norte, Irapuato, C.P. 36824, Guanajuato, Mexico.ORCID http://orcid.org/0000-0002-6910-9229
Samuel TrachselGlobal Maize Program, Centro Internacional de Mejoramiento de Maíz y Trigo (CIMMYT), Km 45 Carretera Mexico-Veracruz, El Batán, 56130, Texcoco, State Of Mexico, Mexico.ORCID http://orcid.org/0000-0003-4727-1871
Axel TiessenDepartamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Km 9.6 Libramiento Norte, Irapuato, C.P. 36824, Guanajuato, Mexico. atiessen@ira.cinvestav.mx.ORCID http://orcid.org/0000-0001-5572-4274
Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional · MXAarhus University · DKKWS Saat (Germany) · DE

Funding

CONACYT 28066; 281064; 54695; PN 2015-01-613
6 · The paper itself

Abstract

key messageThe recent release of the maize genome (AGPv4) contains annotation errors of invertase genes and therefore the enzymes are bestly curated manually at the protein level in a comprehensible fashion The synthesis, transport and degradation of sucrose are determining factors for biomass allocation and yield of crop plants. Invertase (INV) is a key enzyme of carbon metabolism in both source and sink tissues. Current releases of the maize genome correctly annotates only two vacuolar invertases (ivr1 and ivr2) and four cell wall invertases (incw1, incw2 (mn1), incw3, and incw4). Our comprehensive survey identified 21 INV isogenes for which we propose a standard nomenclature grouped phylogenetically by amino acid similarity: three vacuolar (INVVR), eight cell wall (INVCW), and ten alkaline/neutral (INVAN) isogenes which form separate dendogram branches due to distinct molecular features. The acidic enzymes were curated for the presence of the DPN tripeptide which is coded by one of the smallest exons reported in plants. Particular attention was placed on the molecular role of INV in vascular tissues such as the nodes, internodes, leaf sheath, husk leaves and roots. We report the expression profile of most members of the maize INV family in nine tissues in two developmental stages, R1 and R3. INVCW7, INVVR2, INVAN8, INVAN9, INVAN10, and INVAN3 displayed the highest absolute expressions in most tissues. INVVR3, INVCW5, INVCW8, and INVAN1 showed low mRNA levels. Expressions of most INVs were repressed from stage R1 to R3, except for INVCW7 which increased significantly in all tissues after flowering. The mRNA levels of INVCW7 in the vegetative stem correlated with a higher transport rate of assimilates from leaves to the cob which led to starch accumulation and growth of the female reproductive organs.

Indexed as

Computational BiologyAmino Acid Sequencebeta-FructofuranosidaseGenome, PlantHydrolasesIsoenzymesPhylogenyPlant ProteinsSequence AlignmentZea maysbeta-FructofuranosidaseHydrolasesIsoenzymesPlant ProteinsBeta-fructosidaseCornHydrolaseNon-structural carbohydrates paraloguesSucraseZea mays

Identifiers

PMID29948658
OpenAlexW2807868133

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Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.