Evidence map›Paper›PMID 29948460›Full record

ArticleFunctional & integrative genomics2018

Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes.

Yunpeng Cao, Yahui Han, Dandan Meng, Muhammad Abdullah, Jiangliu Yu, Dahui Li, Qing Jin, Yi Lin, Yongping Cai

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Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yunpeng CaoSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.ORCID http://orcid.org/0000-0001-5976-2382
Yahui HanState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, China.
Dandan MengSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Muhammad AbdullahSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Jiangliu YuSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Dahui LiSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Qing JinSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Yi LinSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
Yongping CaiSchool of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. swkx12@ahau.edu.cn.
Anhui Agricultural University · CN

Funding

National Natural Science Foundation of China 31640068
6 · The paper itself

Abstract

GDSL-type esterase/lipase (GELP) is mainly characterized by a conserved GDSL domain at N terminus, and is widely found in all living species, both prokaryotes and eukaryotes. GELP gene family consists of a wide range of members playing important roles in plant physiological processes, such as development, stress responses, and functional divergences. In our study, 597 GELP genes were identified from six Rosaceae genomes (i.e., Fragaria vesca, Prunus persica, Prunus avium, Prunus mume, Pyrus bretschneideri, and Malus domestica) by a comprehensive analysis. All GELP genes were further divided into ten subfamilies based on phylogenetic tree analysis. Subfamily D and subfamily E are the two largest subfamilies. Microcollinearity analysis suggested that WGD/segmental events contribute to the expansion of the GELP gene family in M. domestica and P. bretschneideri compared to F. vesca, P. persica, P. avium, and P. mume. Some PbGELPs were expressed during the fruit development of P. bretschneideri and pollen tubes, indicating their activity in these tissues. The expression divergence of PbGELP duplication gene pairs suggests that many mutations were allowed during evolution, although the structure of GELP genes was highly conserved. The current study results provided the feasibility to understand the expansion and evolution patterns of GELP in Rosaceae genomes, and highlight the function during P. bretschneideri fruits and pollen tubes development.

Indexed as

Evolution, MolecularEsterasesFruitGene DuplicationGene Expression Regulation, PlantGenome, PlantLipasePhylogenyRosaceaeEsterasesLipaseDuplication modesExpressionGDSL-type esterases/lipasesPollen development

Identifiers

PMID29948460
OpenAlexW2807965010

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.