Evidence map›Paper›PMID 29947797›Full record

ArticleGenome biology and evolution2018

Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones.

Hayden L Smith, Ana Pavasovic, Joachim M Surm, Matthew J Phillips, Peter J Prentis

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hayden L SmithSchool of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Ana PavasovicSchool of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Joachim M SurmSchool of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Matthew J PhillipsSchool of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Peter J PrentisSchool of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Queensland, Australia.
Queensland University of Technology · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The globin gene superfamily has been well-characterized in vertebrates, however, there has been limited research in early-diverging lineages, such as phylum Cnidaria. This study aimed to identify globin genes in multiple cnidarian lineages, and use bioinformatic approaches to characterize the evolution, structure, and expression of these genes. Phylogenetic analyses and in silico protein predictions showed that all cnidarians have undergone an expansion of globin genes, which likely have a hexacoordinate protein structure. Our protein modeling has also revealed the possibility of a single pentacoordinate globin lineage in anthozoan species. Some cnidarian globin genes displayed tissue and development specific expression with very few orthologous genes similarly expressed across species. Our phylogenetic analyses also revealed that eumetazoan globin genes form a polyphyletic relationship with vertebrate globin genes. Overall, our analyses suggest that a Ngb-like and GbX-like gene were most likely present in the globin gene repertoire for the last common ancestor of eumetazoans. The identification of a large-scale expansion and subfunctionalization of globin genes in actiniarians provides an excellent starting point to further our understanding of the evolution and function of the globin gene superfamily in early-diverging lineages.

Indexed as

AnimalsEvolution, MolecularGene Expression ProfilingGene Expression RegulationGenetic Association StudiesGlobinsLikelihood FunctionsMultigene FamilyPhylogenyReproducibility of ResultsSea AnemonesSequence Analysis, RNATranscriptomeGlobins

Identifiers

PMID29947797
PMCPMC6077788
OpenAlexW2811180050

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.