Evidence map›Paper›PMID 29946163›Full record

ArticleNature microbiology2018

Modelling Cryptosporidium infection in human small intestinal and lung organoids.

Inha Heo, Devanjali Dutta, Deborah A Schaefer, Nino Iakobachvili, Benedetta Artegiani, Norman Sachs, Kim E Boonekamp, Gregory Bowden, Antoni P A Hendrickx, Robert J L Willems and 4 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05290961 (Drug Response in Patient-derived Organoids Models of Advanced or Recurrent Ovarian Cancer, an Exploratory Research), which is not on this map. Cited by 232 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
232citing papers in PubMed, 2 pooled it
35.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05290961 unknown statusnot on this mapstarted 2022, after this paper: background citation

Drug Response in Patient-derived Organoids Models of Advanced or Recurrent Ovarian Cancer, an Exploratory Research

Typeobservational_patient_registrySponsorChongqing University Cancer HospitalRan2022 to 2024Enrolled30ConditionsOvarian Neoplasms
3 · Its place in the literature

Who cites it

232 citing papers in PubMed, 2 syntheses or guidelines pooled it, 398 citations in OpenAlex.

  1. Pooled it
  2. Advances in Engineering Human Tissue Models.Frontiers in bioengineering and biotechnology · 2020
    Pooled it
  3. Article
  4. Article
  5. Recent advancements and limitations of intestinal organoids for clinical applications.Progress in biomedical engineering (Bristol, England) · 2026
    Review
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172 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Inha Heo *Hubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands.
Devanjali Dutta *Hubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands.
Deborah A SchaeferSchool of Animal and Comparative Biomedical Sciences, College of Agriculture and Life Sciences, University of Arizona, Tucson, AZ, USA.
Nino IakobachviliThe Maastricht Multimodal Molecular Imaging Institute (M4I), Maastricht University, Maastricht, The Netherlands.
Benedetta ArtegianiHubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands.
Norman SachsHubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-5467-7151
Kim E BoonekampHubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands.
Gregory BowdenVeterinary Microbiology and Pathology, College of Veterinary Medicine, Washington State University, Pullman, WA, USA.
Antoni P A HendrickxDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Robert J L WillemsDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Peter J PetersThe Maastricht Multimodal Molecular Imaging Institute (M4I), Maastricht University, Maastricht, The Netherlands.
Michael W RiggsSchool of Animal and Comparative Biomedical Sciences, College of Agriculture and Life Sciences, University of Arizona, Tucson, AZ, USA.
Roberta O'ConnorVeterinary Microbiology and Pathology, College of Veterinary Medicine, Washington State University, Pullman, WA, USA. rob.oconnor@wsu.edu.
Hans CleversHubrecht Institute, Oncode Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), UMC Utrecht, Utrecht, The Netherlands. h.clevers@hubrecht.eu.ORCID http://orcid.org/0000-0002-3077-5582
Royal Netherlands Academy of Arts and Sciences · NLMaastricht University · NLUniversity Medical Center Utrecht · NLUniversity of Arizona · USWashington State University · US

Funding

Investigation of a shipworm endosymbiont compound with activity against the AIDS-associated pathogens Cryptosporidium and ToxoplasmaR21AT009174 · NCCIH · WASHINGTON STATE UNIVERSITY · PI O'CONNOR, ROBERTA M · 2016 to 2017
$468k
European Research Council 670133NCCIH NIH HHS R21 AT009174
6 · The paper itself

Abstract

Stem-cell-derived organoids recapitulate in vivo physiology of their original tissues, representing valuable systems to model medical disorders such as infectious diseases. Cryptosporidium, a protozoan parasite, is a leading cause of diarrhoea and a major cause of child mortality worldwide. Drug development requires detailed knowledge of the pathophysiology of Cryptosporidium, but experimental approaches have been hindered by the lack of an optimal in vitro culture system. Here, we show that Cryptosporidium can infect epithelial organoids derived from human small intestine and lung. The parasite propagates within the organoids and completes its complex life cycle. Temporal analysis of the Cryptosporidium transcriptome during organoid infection reveals dynamic regulation of transcripts related to its life cycle. Our study presents organoids as a physiologically relevant in vitro model system to study Cryptosporidium infection.

Indexed as

CryptosporidiosisCryptosporidiumGene Expression ProfilingGene Expression RegulationHumansIntestine, SmallLungModels, BiologicalOrgan Culture TechniquesOrganoidsSequence Analysis, RNASpatio-Temporal Analysis

Identifiers

PMID29946163
PMCPMC6027984
OpenAlexW2809107133

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.