Evidence map›Paper›PMID 29946138›Full record

ArticleEmerging microbes & infections2018

Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential.

Matthew R Gemmell, Susan Berry, Indrani Mukhopadhya, Richard Hansen, Hans L Nielsen, Mona Bajaj-Elliott, Henrik Nielsen, Georgina L Hold

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Trial
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  4. Genetic Diversity ofMicroorganisms · 2025
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  5. Preharvest Control ofMicroorganisms · 2025
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  9. Capturing clinically relevantMicrobial genomics · 2024
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  11. Investigation ofFrontiers in microbiology · 2023
    Article
  12. Article
  13. Microbial genomics · 2022
    Article
  14. Review
  15. Immune-Mediated Aggravation of theInternational journal of molecular sciences · 2021
    Article
  16. Review
  17. Article
  18. Analysis of completeMicrobial genomics · 2020
    Article
  19. Innovative application of nested PCR for detection ofJournal of oral microbiology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Matthew R GemmellCentre for Genome Enabled Biology and Medicine, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen,, AB25 2ZD, UK.
Susan BerryGI Research Group, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen,, AB25 2ZD, UK.
Indrani MukhopadhyaGI Research Group, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen,, AB25 2ZD, UK.
Richard HansenDepartment of Paediatric Gastroenterology, Royal Hospital for Children, Glasgow, G51 4TF, UK.ORCID http://orcid.org/0000-0002-3944-6646
Hans L NielsenDepartment of Clinical Microbiology, Aalborg University Hospital, DK9100, Aalborg, Denmark.
Mona Bajaj-ElliottInfection, Immunity, Inflammation Programme, UCL Great Ormond Street Institute of Child Health, 30 Guildford Street, London, WC1N 1EH, UK.
Henrik NielsenDepartment of Infectious Diseases, Aalborg University Hospital, DK9100, Aalborg, Denmark.
Georgina L HoldGI Research Group, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen,, AB25 2ZD, UK. georgina.hold@unsw.edu.au.ORCID http://orcid.org/0000-0001-7573-3397
University of Aberdeen · GBAalborg University Hospital · DKInstitute of Infection and Immunity · CARoyal Hospital for Children · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, an increasing number of Campylobacter species have been associated with human gastrointestinal (GI) diseases including gastroenteritis, inflammatory bowel disease, and colorectal cancer. Campylobacter concisus, an oral commensal historically linked to gingivitis and periodontitis, has been increasingly detected in the lower GI tract. In the present study, we generated robust genome sequence data from C. concisus strains and undertook a comprehensive pangenome assessment to identify C. concisus virulence properties and to explain potential adaptations acquired while residing in specific ecological niche(s) of the GI tract. Genomes of 53 new C. concisus strains were sequenced, assembled, and annotated including 36 strains from gastroenteritis patients, 13 strains from Crohn's disease patients and four strains from colitis patients (three collagenous colitis and one lymphocytic colitis). When compared with previous published sequences, strains clustered into two main groups/genomospecies (GS) with phylogenetic clustering explained neither by disease phenotype nor sample location. Paired oral/faecal isolates, from the same patient, indicated that there are few genetic differences between oral and gut isolates which suggests that gut isolates most likely reflect oral strain relocation. Type IV and VI secretion systems genes, genes known to be important for pathogenicity in the Campylobacter genus, were present in the genomes assemblies, with 82% containing Type VI secretion system genes. Our findings indicate that C. concisus strains are genetically diverse, and the variability in bacterial secretion system content may play an important role in their virulence potential.

Indexed as

Genetic VariationGenome, BacterialGenomicsCampylobacterCampylobacter InfectionsCluster AnalysisComputational BiologyFecesHost-Pathogen InteractionsHumansMolecular Sequence AnnotationPhenotypePhylogenyReproducibility of ResultsVirulenceVirulence FactorsVirulence Factors

Identifiers

PMID29946138
PMCPMC6018663
OpenAlexW2810017940

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.