Evidence map›Paper›PMID 29945615›Full record

ArticleAnnals of clinical microbiology and antimicrobials2018

The draft genomes and investigation of serotype distribution, antimicrobial resistance of group B Streptococcus strains isolated from urine in Suzhou, China.

Yong Guo, Xiao Deng, Yuan Liang, Liang Zhang, Guo-Ping Zhao, Yan Zhou

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. The Plasmidomic Landscape of Clinical Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Article
  4. The immune responses to differentFrontiers in immunology · 2022
    Review
  5. Urinary tract infection due to Group BClinical case reports · 2021
    Article
  6. Article
  7. Article
  8. Streptococcus agalactiae strains isolated from cancer patients in Rio de Janeiro, Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  9. Article
  10. Virulence · 2019
    Article
  11. Article
  12. A Case of Urinary Sepsis Secondary toCase reports in infectious diseases · 2019
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Yong GuoInstitutes of Biology and Medical Sciences, Medical College of Soochow University, Suzhou, 215123, China.
Xiao DengInstitutes of Biology and Medical Sciences, Medical College of Soochow University, Suzhou, 215123, China.
Yuan LiangState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, 200433, China.
Liang ZhangShanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center at Shanghai, Shanghai, 201203, China.
Guo-Ping ZhaoState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, 200433, China.
Yan ZhouState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, 200433, China. zhouy@fudan.edu.cn.
Fudan University · CNSoochow University · CNChinese National Human Genome Center · CNChinese National Human Genome Center at Shanghai · CN

Funding

National Key Research Program of China 2017YFC0907503Science and Technology Commission of Shanghai Municipality 16ZR1423900Science and Technology Commission of Shanghai Municipality 17DZ2270800
6 · The paper itself

Abstract

backgroundThe group B Streptococcus (GBS) is a human commensal bacterium, which is capable of causing several infectious diseases in infants, and people with chronic diseases. GBS has been the most common cause of infections in urinary tract of the elders, but relatively few studies reported the urine-isolated GBS and their antimicrobial susceptibilities. Hence, we decided to investigate GBS specially isolated from urine in Suzhou, China.

methods27 GBS samples were isolated from urine in Suzhou, China. The PCR and agarose gel electrophoresis were used to identify the serotype distribution. Susceptibility tests were based on MIC test and Kirby-Bauer test. Genome were sequenced via Illumina Hiseq platform and assembled by SPAdes. Genomes of five isolates were sequenced and submitted to NCBI genome database. The sequencing files in fastq format were submitted to NCBI SRA database.

resultsFive serotypes were identified. The resistant rates measured for tetracycline, erythromycin, clindamycin and fluoroquinolones were 74.1, 63.0, 44.4 and 48.1%, respectively. 18.5% of the isolates were nonsusceptible to nitrofurantoin. The resistance to tetracycline was mainly associated with the gene tetM. The erythromycin resistance was mainly associated with the genes ermB and mefE. The genes ermB and lnuB were the prevalent genes in cMLSB type. No known nitrofurantoin resistance gene was found in nitrofurantoin-nonsusceptible GBS.

conclusionsFive serotypes were identified in our study. High rates of GBS isolates were resistant to tetracycline, erythromycin, clindamycin and fluoroquinolones. The genes ermB and lnuB occupied high rates in cMLS

Indexed as

Anti-Bacterial AgentsBase SequenceChinaClindamycinDisk Diffusion Antimicrobial TestsDNA, BacterialErythromycinFluoroquinolonesGenome, BacterialHumansNitrofurantoinSequence Analysis, DNAStreptococcal InfectionsStreptococcus agalactiaeTetracyclineAnti-Bacterial AgentsClindamycinDNA, BacterialErythromycinFluoroquinolonesNitrofurantoinTetracyclineAntimicrobial susceptibilityDrug resistance geneGenomeGroup B StreptococcusSerotype

Identifiers

PMID29945615
PMCPMC6020191
OpenAlexW2810152814

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.