Evidence map›Paper›PMID 29944671›Full record

ArticlePloS one2018

Exploring the role of NCCR variation on JC polyomavirus expression from dual reporter minicircles.

Anne-Sophie L'Honneur, Hervé Leh, Fanny Laurent-Tchenio, Uriel Hazan, Flore Rozenberg, Stéphanie Bury-Moné

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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  14. Intra-patient viral evolution in polyomavirus-related diseases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Anne-Sophie L'HonneurUniversité Paris Descartes, INSERM Paris, France.
Hervé LehLBPA, Université Paris Saclay, CNRS, ENS Paris Saclay, Cachan, France.
Fanny Laurent-TchenioLBPA, Université Paris Saclay, CNRS, ENS Paris Saclay, Cachan, France.
Uriel HazanLBPA, Université Paris Saclay, CNRS, ENS Paris Saclay, Cachan, France.
Flore RozenbergUniversité Paris Descartes, INSERM Paris, France.
Stéphanie Bury-MonéInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, Gif-Sur-Yvette, France.ORCID 0000-0003-2535-2208
Centre National de la Recherche Scientifique · FRDélégation Paris 5 · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

JC virus (JCV), a ubiquitous human polyomavirus, can cause fatal progressive multifocal leukoencephalopathy (PML) in immune compromised patients. The viral genome is composed of two conserved coding regions separated by a highly variable non-coding control region (NCCR). We analyzed the NCCR sequence from 10 PML JCV strains and found new mutations. Remarkably, the NCCR f section was mutated in most cases. We therefore explored the importance of this section in JCV expression in renal (HEK293H) and glioblastoma (U-87MG) cell lines, by adapting the emerging technology of DNA minicircles. Using bidirectional fluorescent reporters, we revealed that impaired NCCR-driven late expression in glioblastoma cells was restored by a short deletion overlapping e and f sections. This study evidenced a relevant link between JCV NCCR polymorphism and cell-type dependent expression. The use of DNA minicircles opens new insights for monitoring the impact of NCCR variation.

Indexed as

Gene Expression Regulation, ViralCell Line, TumorGenome, ViralHEK293 CellsHumansJC VirusLeukoencephalopathy, Progressive MultifocalMutationPolymorphism, GeneticPolyomavirus InfectionsUntranslated RegionsUntranslated Regions

Identifiers

PMID29944671
PMCPMC6019678
OpenAlexW2811195219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.