Evidence map›Paper›PMID 29943359›Full record

ArticlePhotosynthesis research2018

Complementary chromatic and far-red photoacclimations in Synechococcus ATCC 29403 (PCC 7335). I: The phycobilisomes, a proteomic approach.

Priscila Herrera-Salgado, Lourdes E Leyva-Castillo, Emmanuel Ríos-Castro, Carlos Gómez-Lojero

Abstract read
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In one paragraph

Article in Photosynthesis research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Priscila Herrera-SalgadoDepartamento de Bioquímica, Centro de Investigación y Estudios Avanzados del IPN, Mexico City, Mexico.
Lourdes E Leyva-CastilloDepartamento de Bioquímica, Centro de Investigación y Estudios Avanzados del IPN, Mexico City, Mexico.
Emmanuel Ríos-CastroDepartamento de Bioquímica, Centro de Investigación y Estudios Avanzados del IPN, Mexico City, Mexico.
Carlos Gómez-LojeroDepartamento de Bioquímica, Centro de Investigación y Estudios Avanzados del IPN, Mexico City, Mexico. cgomez@cinvestav.mx.
Center for Research and Advanced Studies of the National Polytechnic Institute · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synechococcus ATCC 29403 (PCC 7335) is a unicellular cyanobacterium isolated from Puerto Peñasco, Sonora Mexico. This cyanobacterium performs complementary chromatic acclimation (CCA), far-red light photoacclimation (FaRLiP), and nitrogen fixation. The Synechococcus PCC 7335 genome contains at least 31 genes for proteins of the phycobilisome (PBS). Nine constitutive genes were expressed when cells were grown under white or red lights and the resulting proteins were identified by mass spectrometry in isolated PBS. Five inducible genes were expressed under white light, and phycoerythrin subunits and associated linker proteins were detected. The proteins of five inducible genes expressed under red light were identified, the induced phycocyanin subunits, two rod linkers and the rod-capping linker. The five genes for FaRLiP phycobilisomes were expressed under far-red light together with the apcF gene, and the proteins were identified by mass spectrometry after isoelectric focusing and SDS-PAGE. Based on in silico analysis, Phylogenetic trees, and the observation of a highly conserved amino acid sequence in far-red light absorbing alpha allophycoproteins encoded by FaRLiP gene cluster, we propose a new nomenclature for the genes. Based on a ratio of ApcG2/ApcG3 of six, a model with the arrangement of the allophycocyanin trimers of the core is proposed.

Indexed as

Bacterial ProteinsComputer SimulationElectrophoresis, Polyacrylamide GelGenome, BacterialLightMass SpectrometryModels, BiologicalPhycobilinsPhycobilisomesPhycocyaninPhycoerythrinProteomicsSynechococcusZincallophycocyaninBacterial ProteinsPhycobilinsPhycobilisomesPhycocyaninPhycoerythrinZincComplementary chromatic acclimationCyanobacteriaFar-red light photoacclimationPhotosynthesisPhycobilisomeProteomic analysis

Identifiers

PMID29943359
OpenAlexW2811054541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.