Evidence map›Paper›PMID 29942083›Full record

ArticleNature genetics2018

Leveraging molecular quantitative trait loci to understand the genetic architecture of diseases and complex traits.

Farhad Hormozdiari, Steven Gazal, Bryce van de Geijn, Hilary K Finucane, Chelsea J-T Ju, Po-Ru Loh, Armin Schoech, Yakir Reshef, Xuanyao Liu, Luke O'Connor and 3 more

Abstract read
In one paragraph

Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 122 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
122citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

122 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
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  7. Article
  8. Genetic influences on haematopoiesis.Nature reviews. Genetics · 2026
    Review
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  18. Federated single-cell QTL meta-analysis reveals novel disease mechanisms.bioRxiv : the preprint server for biology · 2026
    Article
  19. Article
  20. Article

62 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Farhad HormozdiariDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA. Hormozdiari@hsph.harvard.edu.ORCID http://orcid.org/0000-0002-5617-6174
Steven GazalDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4510-5730
Bryce van de GeijnDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Hilary K FinucaneDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Chelsea J-T JuDepartment of Computer Science, University of California, Los Angeles, CA, USA.
Po-Ru LohProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-5542-9064
Armin SchoechDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Yakir ReshefDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Xuanyao LiuDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Luke O'ConnorDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
Alexander GusevDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7980-4620
Eleazar EskinDepartment of Computer Science, University of California, Los Angeles, CA, USA.
Alkes L PriceDepartment of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA. aprice@hsph.harvard.edu.ORCID http://orcid.org/0000-0002-2971-7975

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Statistical methods for studies of rare variantsR01MH101244 · NIMH · HARVARD MEDICAL SCHOOL · PI Benjamin Michael Neale, ALKES L PRICE · 2013 to 2026
$9.4M
Statistical methods to localize disease heritability and identify biological mechanismsR01MH107649 · NIMH · BROAD INSTITUTE, INC. · PI NEALE, BENJAMIN MICHAEL · 2015 to 2018
$2.9M
Functionally specialized components of disease heritability in ENCODE dataU01HG009379 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI PRICE, ALKES L, RAYCHAUDHURI, SOUMYA · 2017 to 2021
$2.5M
Network-based prediction and validation of causal schizophrenia genes and variantsR01MH109978 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI EGGAN, KEVIN C, KELLIS, MANOLIS · 2016 to 2020
$2.1M
Genetic Regulation of Gene Expression and its Impact on Phenotypes - SupplementR01MH101782 · NIMH · STANFORD UNIVERSITY · PI SABATTI, CHIARA · 2013 to 2016
$1.3M
Harvard Training Program in Bioinformatics Applied to Diabetes, Obesity and Metabolism.T32DK110919 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS, PATEL, CHIRAG J. · 2017 to 2021
$1.3M
Leveraging molecular QTL to understand the genetic architecture of diseaseF32HG009987 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI HORMOZDIARI, FARHAD · 2018 to 2018
$63k
NHGRI NIH HHS F32 HG009987NHGRI NIH HHS U01 HG009379NIDDK NIH HHS T32 DK110919NIGMS NIH HHS T32 GM007753NIMH NIH HHS R01 MH101244NIMH NIH HHS R01 MH101782NIMH NIH HHS R01 MH107649NIMH NIH HHS R01 MH109978
6 · The paper itself

Abstract

There is increasing evidence that many risk loci found using genome-wide association studies are molecular quantitative trait loci (QTLs). Here we introduce a new set of functional annotations based on causal posterior probabilities of fine-mapped molecular cis-QTLs, using data from the Genotype-Tissue Expression (GTEx) and BLUEPRINT consortia. We show that these annotations are more strongly enriched for heritability (5.84× for eQTLs; P = 1.19 × 10

Indexed as

Multifactorial InheritanceQuantitative Trait LociDiseaseGenome-Wide Association StudyHumansPhenotypePolymorphism, Single NucleotideQuantitative Trait, Heritable

Identifiers

PMID29942083
PMCPMC6030458

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.