Evidence map›Paper›PMID 29942080›Full record

ArticleNature chemical biology2018

Cleavage of a carbon-fluorine bond by an engineered cysteine dioxygenase.

Jiasong Li, Wendell P Griffith, Ian Davis, Inchul Shin, Jiangyun Wang, Fahui Li, Yifan Wang, Daniel J Wherritt, Aimin Liu

Abstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jiasong LiDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.
Wendell P GriffithDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.
Ian DavisDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.
Inchul ShinDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.
Jiangyun WangInstitute of Biophysics, Chinese Academy of Sciences, Beijing, P.R. China.
Fahui LiInstitute of Biophysics, Chinese Academy of Sciences, Beijing, P.R. China.
Yifan WangDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.
Daniel J WherrittDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-8616-9864
Aimin LiuDepartment of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA. Feradical@utsa.edu.ORCID http://orcid.org/0000-0002-4182-8176
The University of Texas at San Antonio · USChinese Academy of Sciences · CN

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
Heme-dependent chemistry in tyrosine oxidation: Diversity Supplement on 5R01GM108988-08 for supporting Samuel MontoyaR01GM108988 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI LIU, AIMIN · 2014 to 2025
$4.2M
NF-kappaB Regulation by Human PirinR01GM107529 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI LI, JIAN-DONG, LIU, AIMIN · 2014 to 2017
$1.0M
Kynurenine metabolites and depression: An in vitro and ex vivo studyR21MH107985 · NIMH · UNIVERSITY OF TEXAS SAN ANTONIO · PI LIU, AIMIN, SHAMSI, SHAHAB AHMED · 2016 to 2017
$420k
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM107529NIGMS NIH HHS R01 GM108988NIMHD NIH HHS G12 MD007591NIMH NIH HHS R21 MH107985
6 · The paper itself

Abstract

Cysteine dioxygenase (CDO) plays an essential role in sulfur metabolism by regulating homeostatic levels of cysteine. Human CDO contains a post-translationally generated Cys93-Tyr157 cross-linked cofactor. Here, we investigated this Cys-Tyr cross-linking by incorporating unnatural tyrosines in place of Tyr157 via a genetic method. The catalytically active variants were obtained with a thioether bond between Cys93 and the halogen-substituted Tyr157, and we determined the crystal structures of both wild-type and engineered CDO variants in the purely uncross-linked form and with a mature cofactor. Along with mass spectrometry and

Indexed as

Protein EngineeringBiocatalysisCarbonCrystallography, X-RayCysteine DioxygenaseFluorineHumansModels, MolecularCarbonCysteine DioxygenaseFluorine

Identifiers

PMID29942080
PMCPMC6103799
OpenAlexW2809736008

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.