Evidence map›Paper›PMID 29942073›Full record

ArticleThe ISME journal2018

Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence.

Annemieke Smet, Koji Yahara, Mirko Rossi, Alfred Tay, Steffen Backert, Ensser Armin, James G Fox, Bram Flahou, Richard Ducatelle, Freddy Haesebrouck and 1 more

Erratum issuedAbstract read
In one paragraph

Article in The ISME journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Complete genome sequences of gastric non-Microbiology resource announcements · 2025
    Article
  6. Molecules (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. Prevalence and diversity of entericIranian journal of microbiology · 2024
    Article
  10. Frontiers in microbiology · 2024
    Review
  11. Article
  12. Role of non-World journal of gastroenterology · 2023
    Review
  13. Article
  14. Frontiers in genetics · 2023
    Article
  15. Article
  16. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. Evolution ofPeerJ · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Annemieke SmetLaboratory Experimental Medicine and Pediatrics, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium. annemieke.smet@uantwerpen.be.ORCID http://orcid.org/0000-0002-1271-6191
Koji YaharaAntimicrobial Resistance Research Center, National Institute of Infectious Diseases, Tokyo, Japan. k-yahara@nih.go.jp.ORCID http://orcid.org/0000-0003-4289-1115
Mirko RossiDepartment of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine, University of Helsinki, Helsinki, Finland. mirko.rossi@helsinki.fi.ORCID http://orcid.org/0000-0002-1585-6384
Alfred TayThe Marshall Centre for Infectious Diseases Research and Training, School of Pathology and Laboratory Medicine, University of Western Australia, Nedlands, Perth, WA, Australia.
Steffen BackertDepartment Biology, Division Microbiology, University Erlangen Nuremberg, Erlangen, Germany.
Ensser ArminInstitute of clinical and Molecular Virology, Universitätsklinikum Erlangen, Erlangen, Germany.ORCID http://orcid.org/0000-0001-8873-3863
James G FoxDivision of Comparative Medicine, Massachusetts Institute of Technology, Cambridge, MA, USA.
Bram FlahouDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.
Richard DucatelleDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.
Freddy HaesebrouckDepartment of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium.ORCID http://orcid.org/0000-0002-1709-933X
Jukka CoranderDepartment of Biostatistics, University of Oslo, Oslo, Norway.

Funding

Project 3 - Molecular Signatures of Gastric Carcinogenesis in the Host Response to H. pyloriP01CA028842 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WILSON, KEITH T. · 1985 to 2019
$15.8M
NCI NIH HHS P01 CA028842
6 · The paper itself

Abstract

Since the discovery of the human pathogen Helicobacter pylori, various other Helicobacter species have been identified in the stomach of domesticated and wild mammals. To better understand the evolutionary history of these ecologically similar but genetically distinct species, we analyzed 108 gastric Helicobacter genomes and included 54 enterohepatic Helicobacter genomes for comparison purposes. An admixture analysis supported the presence of an ecological barrier, preventing the genetic exchange between the gastric and enterohepatic Helicobacter species, and unraveled many gene flow events within and across species residing in the stomach. As pets can be colonized by multiple gastric Helicobacter species, the genetic exchange between the canine and feline strains was evident, with H. heilmannii and H. bizzozeronii showing the highest interspecies recombination. An admixture between H. pylori (in particular, the ancestral African strains), H. acinonychis from wild felines and H. cetorum from marine mammals was also identified. Because these latter species do not share the same host, this phenomenon is most likely a remaining signal of shared ancestry. A reconstruction of the time of divergence of the gastric Helicobacter spp. revealed that the domestic animal-related Helicobacter species evolved in parallel with H. pylori and its two closest relatives (H. acinonychis and H. cetorum), rather than together.

Indexed as

AnimalsAnimals, DomesticCat DiseasesCatsDog DiseasesDogsGenome, BacterialHelicobacterHelicobacter InfectionsHost SpecificityHumansStomachZoonoses

Identifiers

PMID29942073
PMCPMC6154992

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.