ArticleScientific reports2018
Transcriptome analysis of two contrasting rice cultivars during alkaline stress.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- A leucine-rich-repeat receptor-like kinase SERL1 phosphorylates and stabilizes OsALDH2B1 to promote alkaline tolerance and grain size in rice.Journal of integrative plant biology · 2026Article
- Regulatory dynamics of molecular determinants in divergent rice varieties under the influence of nano-structured Zinc: an integrative study of OsbZIP genes and their targeting miRNAs.BMC plant biology · 2026Article
- Differential morpho-physiological traits and hormone signal transduction pathway of Kentucky bluegrass cultivars in response to drought stress.BMC plant biology · 2026Article
- Saline-alkali resilience: the role of Trametes NF1 in promoting alfalfa growth and salinity tolerance.International microbiology : the official journal of the Spanish Society for Microbiology · 2025Article
- Genome-Wide Association Study and Transcriptome Analysis Reveal Alkaline Stress-Responsive Genes in Bread Wheat (International journal of molecular sciences · 2025Article
- Physiological Mechanisms and Core Genes in Response to Saline-Alkali Stress in Foxtail Millet (Biomolecules · 2025Article
- Integrated Transcriptome and Metabolome Analyses Reveal Complex Oxidative Damage Mechanisms in Rice Seedling Roots Under Different Carbonate Stresses.Antioxidants (Basel, Switzerland) · 2025Article
- Article
- Potassium transporter OsHAK17 may contribute to saline-alkaline tolerant mechanisms in rice (Oryza sativa).Journal of plant research · 2024Article
- Review
- Time-Course Transcriptome Analysis ofInternational journal of molecular sciences · 2023Article
- Transcriptome-based strategies for identifying aluminum tolerance genes in popcorn (Zea mays L. var. everta).Scientific reports · 2023Article
- Integrated Transcriptomic and Metabolomic Analyses Uncover the Differential Mechanism in Saline-Alkaline Tolerance betweenInternational journal of molecular sciences · 2023Article
- Genome-Wide Association Study Identified Candidate Genes for Alkalinity Tolerance in Rice.Plants (Basel, Switzerland) · 2023Article
- The pattern of alternative splicing and DNA methylation alteration and their interaction in linseed (Linum usitatissimum L.) response to repeated drought stresses.Biological research · 2023Article
- Transcriptome analyses reveal the effects of mixed saline-alkali stress on indoleacetic acid and cytokinins inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Genetic Dissection of Alkalinity Tolerance at the Seedling Stage in Rice (Plants (Basel, Switzerland) · 2022Article
- Integration of QTL Mapping and Whole Genome Sequencing Identifies Candidate Genes for Alkalinity Tolerance in Rice (International journal of molecular sciences · 2022Article
- Meta-analysis of QTLs and candidate genes associated with seed germination in rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Linking genome wide RNA sequencing with physio-biochemical and cytological responses to catalogue key genes and metabolic pathways for alkalinity stress tolerance in lentil (Lens culinaris Medikus).BMC plant biology · 2022Article
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8 authors.
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Abstract
Soil alkalinity greatly affects plant growth and crop productivity. Although RNA-Seq analyses have been conducted to investigate genome-wide gene expression in response to alkaline stress in many plants, the expressions of alkali-responsive genes in rice have not been previously investigated. In this study, the transcriptomic data between an alkaline-tolerant (WD20342) and an alkaline-sensitive (Caidao) rice cultivar were compared under alkaline stress conditions. A total of 962 important alkali-responsive (IAR) genes from highly differentially expressed genes (DEGs) were identified, including 28 alkaline-resistant cultivar-related genes, 771 alkaline-sensitive cultivar-related genes and 163 cultivar-non-specific genes. Gene ontology (GO) analysis indicated the enrichment of IAR genes involved in various stimulus or stress responses. According to Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, the IAR genes were related primarily to plant hormone signal transduction and biosynthesis of secondary metabolites. Additionally, among these 962 IAR genes, 74 were transcription factors and 15 occurred with differential alternative splicing between the different samples after alkaline treatment. Our results provide a valuable resource on alkali-responsive genes and should benefit the improvement of alkaline stress tolerance in rice.
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