Evidence map›Paper›PMID 29940907›Full record

ArticleBMC public health2018

Exploiting routinely collected severe case data to monitor and predict influenza outbreaks.

Alice Corbella, Xu-Sheng Zhang, Paul J Birrell, Nicki Boddington, Richard G Pebody, Anne M Presanis, Daniela De Angelis

Abstract read
In one paragraph

Article in BMC public health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alice CorbellaMedical Research Council, Biostatistics Unit - University of Cambridge, School of Clinical Medicine, Cambridge, UK. alice.corbella@mrc-bsu.cam.ac.uk.ORCID 0000-0002-8751-181X
Xu-Sheng ZhangCentre for Infectious Disease Surveillance and Control, Public Health England, London, UK.
Paul J BirrellMedical Research Council, Biostatistics Unit - University of Cambridge, School of Clinical Medicine, Cambridge, UK.
Nicki BoddingtonCentre for Infectious Disease Surveillance and Control, Public Health England, London, UK.
Richard G PebodyCentre for Infectious Disease Surveillance and Control, Public Health England, London, UK.
Anne M PresanisCentre for Infectious Disease Surveillance and Control, Public Health England, London, UK.
Daniela De AngelisMedical Research Council, Biostatistics Unit - University of Cambridge, School of Clinical Medicine, Cambridge, UK.

Funding

Health Technology Assessment Programme HTA Project:11/46/03Medical Research Council MC_UI05260666, Program Core SLAH/001Medical Research Council MC_UU_00002/11
6 · The paper itself

Abstract

backgroundInfluenza remains a significant burden on health systems. Effective responses rely on the timely understanding of the magnitude and the evolution of an outbreak. For monitoring purposes, data on severe cases of influenza in England are reported weekly to Public Health England. These data are both readily available and have the potential to provide valuable information to estimate and predict the key transmission features of seasonal and pandemic influenza.

methodsWe propose an epidemic model that links the underlying unobserved influenza transmission process to data on severe influenza cases. Within a Bayesian framework, we infer retrospectively the parameters of the epidemic model for each seasonal outbreak from 2012 to 2015, including: the effective reproduction number; the initial susceptibility; the probability of admission to intensive care given infection; and the effect of school closure on transmission. The model is also implemented in real time to assess whether early forecasting of the number of admissions to intensive care is possible.

resultsOur model of admissions data allows reconstruction of the underlying transmission dynamics revealing: increased transmission during the season 2013/14 and a noticeable effect of the Christmas school holiday on disease spread during seasons 2012/13 and 2014/15. When information on the initial immunity of the population is available, forecasts of the number of admissions to intensive care can be substantially improved.

conclusionReadily available severe case data can be effectively used to estimate epidemiological characteristics and to predict the evolution of an epidemic, crucially allowing real-time monitoring of the transmission and severity of the outbreak.

Indexed as

Disease OutbreaksSeverity of Illness IndexBayes TheoremEnglandForecastingHolidaysHospitalizationHumansInfluenza, HumanModels, StatisticalPopulation SurveillanceRetrospective StudiesSchoolsSeasonsBayesian inferenceEpidemic modelsEpidemic monitoringInfluenzaReproduction numberSevere cases

Identifiers

PMID29940907
PMCPMC6020250

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.