Evidence map›Paper›PMID 29940887›Full record

ArticleBMC cancer2018

Gene expression profile and cancer-associated pathways linked to progesterone receptor isoform a (PRA) predominance in transgenic mouse mammary glands.

María José Carlini, María Sol Recouvreux, Marina Simian, Maria Aparecida Nagai

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 4 countries.

María José CarliniDiscipline of Oncology, Department of Radiology and Oncology, Faculty of Medicine, University of São Paulo, São Paulo, SP, 01246-903, Brazil.
María Sol RecouvreuxInstituto de Oncología "Ángel H. Roffo", Av. San Martín 5481, C1417DTB, Ciudad Autónoma de Buenos Aires, Argentina.
Marina SimianInstituto de Oncología "Ángel H. Roffo", Av. San Martín 5481, C1417DTB, Ciudad Autónoma de Buenos Aires, Argentina.
Maria Aparecida NagaiDiscipline of Oncology, Department of Radiology and Oncology, Faculty of Medicine, University of São Paulo, São Paulo, SP, 01246-903, Brazil. nagai@usp.br.ORCID http://orcid.org/0000-0002-0728-4937
Universidade de São Paulo · BRInstituto de Oncología de Rosario · ARNational University of General San Martín · AR

Funding

Consejo Nacional de Investigaciones Científicas y Técnicas PIP 11220150100155COConselho Nacional de Desenvolvimento Científico e Tecnológico 303134/2013-5Fundação de Amparo à Pesquisa do Estado de São Paulo 2014/13470-8Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/10208-3
6 · The paper itself

Abstract

backgroundProgesterone receptor (PR) is expressed from a single gene as two isoforms, PRA and PRB. In normal breast human tissue, PRA and PRB are expressed in equimolar ratios, but isoform ratio is altered during malignant progression, usually leading to high PRA:PRB ratios. We took advantage of a transgenic mouse model where PRA isoform is predominant (PRA transgenics) and identified the key transcriptional events and associated pathways underlying the preneoplastic phenotype in mammary glands of PRA transgenics as compared with normal wild-type littermates.

methodsThe transcriptomic profiles of PRA transgenics and wild-type mammary glands were generated using microarray technology. We identified differentially expressed genes and analyzed clustering, gene ontology (GO), gene set enrichment analysis (GSEA), and pathway profiles. We also performed comparisons with publicly available gene expression data sets of human breast cancer.

resultsWe identified a large number of differentially expressed genes which were mainly associated with metabolic pathways for the PRA transgenics phenotype while inflammation- related pathways were negatively correlated. Further, we determined a significant overlap of the pathways characterizing PRA transgenics and those in breast cancer subtypes Luminal A and Luminal B and identified novel putative biomarkers, such as PDHB and LAMB3.

conclusionThe transcriptional targets identified in this study should facilitate the formulation or refinement of useful molecular descriptors for diagnosis, prognosis, and therapy of breast cancer.

Indexed as

TranscriptomeAnimalsBreast NeoplasmsFemaleGene OntologyHumansMammary Glands, AnimalMiceMice, TransgenicNF-kappa BOxidative PhosphorylationReceptors, ProgesteroneTumor Necrosis Factor-alphaNF-kappa Bprogesterone receptor AReceptors, ProgesteroneTumor Necrosis Factor-alphaBiomarkerBreast cancerGene expression profilingGene set enrichment analysisHyperplasiaIsoformsMammary glandProgesterone receptorTransgenic mice

Identifiers

PMID29940887
PMCPMC6019805
OpenAlexW2810393747

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.