Evidence map›Paper›PMID 29940100›Full record

ArticleBiochemistry2018

SmgGDS-607 Regulation of RhoA GTPase Prenylation Is Nucleotide-Dependent.

Benjamin C Jennings, Alexis J Lawton, Zeinab Rizk, Carol A Fierke

Open access · greenAbstract read
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Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Benjamin C JenningsDepartment of Chemistry , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-7255-2715
Alexis J LawtonDepartment of Chemistry , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-1065-0846
Zeinab RizkDepartment of Chemistry , University of Michigan , Ann Arbor , Michigan 48109 , United States.
Carol A FierkeDepartment of Chemistry , University of Michigan , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-1481-0579
University of Michigan · US

Funding

STRUCTURE/FUNCTION OF ZINC METALLOPROTEINSR01GM040602 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FIERKE, CAROL A · 1993 to 2017
$6.0M
Regulation and trafficking of prenylated proteinsF32GM112317 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JENNINGS, BENJAMIN C · 2014 to 2015
$109k
NIGMS NIH HHS F32 GM112317NIGMS NIH HHS R01 GM040602
6 · The paper itself

Abstract

Protein prenylation involves the attachment of a hydrophobic isoprenoid moiety to the C-terminus of proteins. Several small GTPases, including members of the Ras and Rho subfamilies, require prenylation for their normal and pathological functions. Recent work has suggested that SmgGDS proteins regulate the prenylation of small GTPases in vivo. Using RhoA as a representative small GTPase, we directly test this hypothesis using biochemical assays and present a mechanism describing the mode of prenylation regulation. SmgGDS-607 completely inhibits RhoA prenylation catalyzed by protein geranylgeranyltransferase I (GGTase-I) in an in vitro radiolabel incorporation assay. SmgGDS-607 inhibits prenylation by binding to and blocking access to the C-terminal tail of the small GTPase (substrate sequestration mechanism) rather than via inhibition of the prenyltransferase activity. The reactivity of GGTase-I with RhoA is unaffected by addition of nucleotides. In contrast, the affinity of SmgGDS-607 for RhoA varies with the nucleotide bound to RhoA; SmgGDS-607 has a higher affinity for RhoA-GDP compared to RhoA-GTP. Consequently, the prenylation blocking function of SmgGDS-607 is regulated by the bound nucleotide. This work provides mechanistic insight into a novel pathway for the regulation of small GTPase protein prenylation by SmgGDS-607 and demonstrates that peptides are a good mimic for full-length proteins when measuring GGTase-I activity.

Indexed as

Alkyl and Aryl TransferasesGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateHumansProtein BindingProtein PrenylationrhoA GTP-Binding ProteinAlkyl and Aryl Transferasesgeranylgeranyltransferase type-IGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateRAP1GDS1 protein, humanrhoA GTP-Binding Protein

Identifiers

PMID29940100
PMCPMC6686180
OpenAlexW2809706566

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.