Evidence map›Paper›PMID 29940014›Full record

ArticlePloS one2018

Coexpression network and phenotypic analysis identify metabolic pathways associated with the effect of warming on grain yield components in wheat.

Christine Girousse, Jane Roche, Claire Guerin, Jacques Le Gouis, Sandrine Balzegue, Said Mouzeyar, Mohamed Fouad Bouzidi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
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  4. Article
  5. Article
  6. Insights into FourInternational journal of molecular sciences · 2022
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  7. Review
  8. Overexpression ofFrontiers in plant science · 2022
    Article
  9. Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Christine GirousseGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Jane RocheGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.ORCID 0000-0001-9270-3915
Claire GuerinGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Jacques Le GouisGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Sandrine BalzegueTranscriptomic Platform of iPS2, INRA, Evry, France.
Said MouzeyarGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Mohamed Fouad BouzidiGDEC, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.
Université Clermont Auvergne · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat grains are an important source of human food but current production amounts cannot meet world needs. Environmental conditions such as high temperature (above 30°C) could affect wheat production negatively. Plants from two wheat genotypes have been subjected to two growth temperature regimes. One set has been grown at an optimum daily mean temperature of 19°C while the second set of plants has been subjected to warming at 27°C from two to 13 days after anthesis (daa). While warming did not affect mean grain number per spike, it significantly reduced other yield-related indicators such as grain width, length, volume and maximal cell numbers in the endosperm. Whole genome expression analysis identified 6,258 and 5,220 genes, respectively, whose expression was affected by temperature in the two genotypes. Co-expression analysis using WGCNA (Weighted Gene Coexpression Network Analysis) uncovered modules (groups of co-expressed genes) associated with agronomic traits. In particular, modules enriched in genes related to nutrient reservoir and endopeptidase inhibitor activities were found to be positively associated with cell numbers in the endosperm. A hypothetical model pertaining to the effects of warming on gene expression and growth in wheat grain is proposed. Under moderately high temperature conditions, network analyses suggest a negative effect of the expression of genes related to seed storage proteins and starch biosynthesis on the grain size in wheat.

Indexed as

Gene Regulatory NetworksGlobal WarmingAgricultureCluster AnalysisDown-RegulationEndospermGene Expression Regulation, PlantGenes, PlantGenetic LinkageGenotypeMetabolic Networks and PathwaysPhenotypeSeedsTemperatureTriticumUp-Regulation

Identifiers

PMID29940014
PMCPMC6016909
OpenAlexW2810268382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.