Evidence map›Paper›PMID 29939987›Full record

ArticlePloS one2018

Heat stress transcripts, differential expression, and profiling of heat stress tolerant gene TaHsp90 in Indian wheat (Triticum aestivum L.) cv C306.

Harinder Vishwakarma, Alim Junaid, Jayanand Manjhi, Gyanendra Pratap Singh, Kishor Gaikwad, Jasdeep Chatrath Padaria

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  4. Review
  5. Review
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  11. Meta-QTLs, ortho-MQTLs, and candidate genes for thermotolerance in wheat (Molecular breeding : new strategies in plant improvement · 2021
    Article
  12. Article
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  15. Article
  16. Drought tolerance in3 Biotech · 2020
    Article
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  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Harinder VishwakarmaNational Research Centre on Plant Biotechnology, Pusa campus, New Delhi, India.
Alim JunaidNational Research Centre on Plant Biotechnology, Pusa campus, New Delhi, India.
Jayanand ManjhiShobhit University, Meerut, Uttar Pradesh, India.
Gyanendra Pratap SinghIndian Institute of Wheat and Barley Research, Karnal, India.
Kishor GaikwadNational Research Centre on Plant Biotechnology, Pusa campus, New Delhi, India.
Jasdeep Chatrath PadariaNational Research Centre on Plant Biotechnology, Pusa campus, New Delhi, India.ORCID 0000-0002-5246-2691
National Research Centre on Plant Biotechnology · INIndian Institute of Wheat and Barley Research · INShobhit University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To generate a genetic resource of heat stress responsive genes/ESTs, suppression subtractive hybridization (SSH) library was constructed in a heat and drought stress tolerant Indian bread wheat cultivar C306. Ninety three days old plants during grain filling stage were subjected to heat stress at an elevated temperature of 37°C and 42°C for different time intervals (30 min, 1h, 2h, 4h, and 6h). Two subtractive cDNA libraries were prepared with RNA isolated from leaf samples at 37°C and 42°C heat stress. The ESTs obtained were reconfirmed by reverse northern dot blot hybridization. A total of 175 contigs and 403 singlets were obtained from 1728 ESTs by gene ontology analysis. Differential expression under heat stress was validated for a few selected genes (10) by qRT-PCR. A transcript showing homology to Hsp90 was observed to be upregulated (7.6 fold) under heat stress in cv. C306. CDS of TaHsp90 (Accession no. MF383197) was isolated from cv. C306 and characterized. Heterologous expression of TaHsp90 was validated in E. coli BL21 and confirmed by protein gel blot and MALDI-TOF analysis. Computational based analysis was carried out to understand the molecular functioning of TaHsp90. The heat stress responsive SSH library developed led to identification of a number of heat responsive genes/ESTs, which can be utilized for unravelling the heat tolerance mechanism in wheat. Gene TaHsp90 isolated and characterized in the present study can be utilized for developing heat tolerant transgenic crops.

Indexed as

Up-RegulationComputer SimulationDroughtsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantHeat-Shock ResponseHSP90 Heat-Shock ProteinsPlant ProteinsTriticumHSP90 Heat-Shock ProteinsPlant Proteins

Identifiers

PMID29939987
PMCPMC6016904
OpenAlexW2810080451

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.