Evidence map›Paper›PMID 29939088›Full record

ArticleBioTechniques2018

A PAGE screening approach for identifying CRISPR-Cas9-induced mutations in zebrafish.

Ariel J VanLeuven, Sungdae Park, Douglas B Menke, James D Lauderdale

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ariel J VanLeuvenDepartment of Cellular Biology, University of Georgia, 724 Biological Sciences Building, Athens, GA 30602-2607, USA.
Sungdae ParkDepartment of Genetics, University of Georgia, Paul D Coverdell Center, 500 D.W. Brooks Drive, Room 250, Athens, GA 30602, USA.
Douglas B MenkeDepartment of Genetics, University of Georgia, Paul D Coverdell Center, 500 D.W. Brooks Drive, Room 250, Athens, GA 30602, USA.
James D LauderdaleDepartment of Cellular Biology, University of Georgia, 724 Biological Sciences Building, Athens, GA 30602-2607, USA.
University of Georgia · USGTx (United States) · US

Funding

CRCNS: Quantum of Network Dysfunction in Epilepsy-Understanding the Inhibitory RestraintR01NS090645 · NINDS · UNIVERSITY OF GEORGIA · PI LAUDERDALE, JAMES D · 2014 to 2018
$1.6M
Developmental context and the control of appendage cis-regulatory networksR01HD081034 · NICHD · UNIVERSITY OF GEORGIA · PI MENKE, DOUGLAS BAY · 2014 to 2018
$1.5M
NICHD NIH HHS R01 HD081034NINDS NIH HHS R01 NS090645
6 · The paper itself

Abstract

The introduction of CRISPR-Cas9 technology for targeted mutagenesis has revolutionized reverse genetics and made genome editing a realistic option in many model organisms. One of the difficulties with this technique is screening for mutations in large numbers of samples. Many screening approaches for identifying CRISPR-Cas9 mutants have been published; however, in practice these methods are time consuming, expensive, or often yield false positives. This report describes a PCR-based screening approach using non-denaturing PAGE. This approach does not depend on the formation of heteroduplexes and reliably detects changes as small as 1 base-pair (bp) in nucleic acid length at the target site. This approach can be used to identify novel mutations and is also useful as a routine genotyping method.

Indexed as

AnimalsCRISPR-Cas SystemsDNAGenotyping TechniquesMutationNative Polyacrylamide Gel ElectrophoresisPolymerase Chain ReactionZebrafishDNADanio reriogenotypingpolymerase chain reaction (PCR)

Identifiers

PMID29939088
PMCPMC9580339
OpenAlexW2808948286

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.