Evidence map›Paper›PMID 29937754›Full record

ArticleFrontiers in microbiology2018

Optofluidic Single-Cell Genome Amplification of Sub-micron Bacteria in the Ocean Subsurface.

Zachary C Landry, Kevin Vergin, Christopher Mannenbach, Stephen Block, Qiao Yang, Paul Blainey, Craig Carlson, Stephen Giovannoni

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Industrial Biotechnology Based on Enzymes From Extreme Environments.Frontiers in bioengineering and biotechnology · 2022
    Review
  9. Article
  10. Macrofaunal control of microbial community structure in continental margin sediments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  11. Article
  12. Cell Separations and Sorting.Analytical chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Zachary C LandryDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Kevin VerginDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Christopher MannenbachDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Stephen BlockDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Qiao YangDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Paul BlaineyDepartment of Biological Engineering, Broad Institute of MIT and Harvard, Cambridge, MA, United States.
Craig CarlsonDepartment of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, Santa Barbara, CA, United States.
Stephen GiovannoniDepartment of Microbiology, Oregon State University, Corvallis, OR, United States.
Oregon State University · USBroad Institute · USChinese Academy of Fishery Sciences · CNUniversity of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optofluidic single-cell genome amplification was used to obtain genome sequences from sub-micron cells collected from the euphotic and mesopelagic zones of the northwestern Sargasso Sea. Plankton cells were visually selected and manually sorted with an optical trap, yielding 20 partial genome sequences representing seven bacterial phyla. Two organisms, E01-9C-26 (

Indexed as

bermuda-atlantic time-seriesE01-9C-26marine microbiologymicrofluidicsoptofluidicssingle-cell genomics

Identifiers

PMID29937754
PMCPMC6003095
OpenAlexW2803278511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.