ArticleMolecular biology reports2018
Prediction of auxin response elements based on data fusion in Arabidopsis thaliana.
Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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4 citing papers in PubMed, 6 citations in OpenAlex.
- An Unexpected Regulatory Sequence from Rho-Related GTPase6 Confers Fiber-Specific Expression in Upland Cotton.International journal of molecular sciences · 2022Article
- Analysis of the impact of indole-3-acetic acid (IAA) on gene expression during leaf senescence inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Auxin Directly UpregulatesFrontiers in plant science · 2020Article
- The roles of Aux/IAA gene family in development of Dendrocalamus sinicus (Poaceae: Bambusoideae) inferred by comprehensive analysis and expression profiling.Molecular biology reports · 2019Article
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
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Abstract
The plant hormone "auxin" is a key regulator of plant development and environmental responses. Many genes in Arabidopsis thaliana are known to be up-regulated in response to auxin. Auxin response factors activate or repress the expression of genes by binding at their promoter regions within auxin response elements (AuxRE) that are key regulatory cis-acting motives. Therefore, the identification of auxin-response elements is among the most important issues to understand the auxin regulation mechanisms. Thus, searching the TGTCTC motif is an unreliable method to identify AuxRE because many AuxRE variants may also be functional. In the present study, we perform an In-silico prediction of AuxREs in promoters of primary auxin responsive genes. We exploit microarray data of auxin response in Arabidopsis thaliana seedlings, in order to provide biological annotation to AuxRE. We apply a data fusion method based on the combined use of evidence theory and fuzzy sets to scan upstream sequences of response genes.
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