Evidence map›Paper›PMID 29934971›Full record

ReviewIUBMB life2018

Genome wide analysis of meiotic recombination in yeast: For a few SNPs more.

Parijat Chakraborty, Ajith V Pankajam, Abhishek Dutta, Koodali T Nishant

Open access · hybridAbstract readReview
In one paragraph

Review in IUBMB life, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Polymorphism ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Parijat ChakrabortySchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum, India.
Ajith V PankajamSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum, India.
Abhishek DuttaSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum, India.
Koodali T NishantSchool of Biology, Indian Institute of Science Education and Research, Thiruvananthapuram, Trivandrum, India.ORCID 0000-0002-4342-7501
Indian Institute of Science Education and Research Thiruvananthapuram · IN

Funding

Wellcome TrustWellcome Trust IA/I/11/2500268
6 · The paper itself

Abstract

Diploid organisms undergo meiosis to produce haploid germ cells. Crossover events during meiosis promote genetic diversity and facilitate accurate chromosome segregation. The baker's yeast Saccharomyces cerevisiae is extensively used as a model for analysis of meiotic recombination. Conventional methods for measuring recombination events in S. cerevisiae have been limited by the number and density of genetic markers. Next generation sequencing (NGS)-based analysis of hybrid yeast genomes bearing thousands of heterozygous single nucleotide polymorphism (SNP) markers has revolutionized analysis of meiotic recombination. By facilitating analysis of marker segregation in the whole genome with unprecedented resolution, this method has resulted in the generation of high-resolution recombination maps in wild-type and meiotic mutants. These studies have provided novel insights into the mechanism of meiotic recombination. In this review, we discuss the methodology, challenges, insights and future prospects of using NGS-based methods for whole genome analysis of meiotic recombination. The objective is to facilitate the use of these high through-put sequencing methods for the analysis of meiotic recombination given their power to provide significant new insights into the process. © 2018 The Authors. IUBMB Life published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology, 70(8):743-752, 2018.

Indexed as

Recombination, GeneticChromosome SegregationGenome, FungalHigh-Throughput Nucleotide SequencingMeiosisPolymorphism, Single NucleotideSaccharomyces cerevisiaehybrid genomemeiosisnext generation sequencingrecombinationyeast

Identifiers

PMID29934971
PMCPMC6120447
OpenAlexW2810948687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.