Evidence map›Paper›PMID 29934934›Full record

ArticleGenes & genomics2018

Gene profiling involved in fate determination of salivary gland type in mouse embryogenesis.

Nirpesh Adhikari, Sanjiv Neupane, Jiyeon Roh, Yam Prasad Aryal, Eui-Seon Lee, Jae-Kwang Jung, Hitoshi Yamamoto, Youngkyun Lee, Wern-Joo Sohn, Jae-Young Kim and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Nirpesh AdhikariDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Sanjiv NeupaneDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Jiyeon RohDepartment of Dental Hygiene, Wonju College of Medicine, Yonsei University, Wonju, South Korea.
Yam Prasad AryalDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Eui-Seon LeeDepartment of Dental Hygiene, College of Health Science, Gachon University, 191, Hambangmoe-ro, Yeonsu-gu, Incheon, South Korea.
Jae-Kwang JungDepartment of Oral Medicine, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Hitoshi YamamotoDepartment of Histology and Developmental Biology, Tokyo Dental College, Tokyo, Japan.
Youngkyun LeeDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea.
Wern-Joo SohnDivision of Biotechnology and Convergence, Daegu Haany University, Gyeongsan, Republic of Korea.
Jae-Young KimDepartment of Biochemistry, School of Dentistry, IHBR, Kyungpook National University, Daegu, South Korea. jykim91@knu.ac.kr.ORCID http://orcid.org/0000-0002-6752-5683
Ji-Youn KimDepartment of Dental Hygiene, College of Health Science, Gachon University, 191, Hambangmoe-ro, Yeonsu-gu, Incheon, South Korea. hoho6434@gachon.ac.kr.
Kyungpook National University · KRGachon University · KRDaegu Haany University · KRTokyo Dental College · JPYonsei University · KR

Funding

National Research Foundation of Korea NRF-2016R1D1A1B03934494
6 · The paper itself

Abstract

Salivary gland (SG) development involves dynamic epithelial-mesenchymal interactions resulting in the formation of highly branched epithelial structures that produce and secrete saliva. The SG epithelium differentiates into saliva-producing terminal buds, i.e., acini, and transporting ducts. Most studies on the salivary gland have focused on branching morphogenesis; however, acinar cell differentiation underlying the determination of serous or mucous salivary glands is unclear. The objective of this study was to identify the mesenchymal signaling molecules involved in the epithelial differentiation of the salivary gland type as serous or mucous. Salivary glands undergoing stage-specific development, including the parotid gland (PG) and the sublingual gland (SLG) at embryonic day 14.5 (E14.5) were dissected. The glands were treated with dispase II to separate the epithelium and the mesenchyme. RNA from mesenchyme was processed for microarray analysis. Thereafter, microarray data were analyzed to identify putative candidate molecules involved in salivary gland differentiation and confirmed via quantitative reverse transcription polymerase chain reaction. The microarray analysis revealed the expression of 31,873 genes in the PG and SLG mesenchyme. Of the expressed genes 21,026 genes were found to be equally expressed (Fold change 1.000) in both PG and SLG mesenchyme. The numbers of genes expressed over onefold in the PG and SLG mesenchyme were found to be 5247 and 5600 respectively. On limiting the fold-change cut off value over 1.5 folds, only 214 and 137 genes were expressed over 1.5 folds in the PG and the SLG mesenchyme respectively. Our findings suggest that differential expression patterns of the mesenchymal signaling molecules are involved in fate determination of the salivary acinar cell types during mouse embryogenesis. In the near future, functional evaluation of the candidate genes will be performed using gain- and loss-of-function mutation studies during in vitro organ cultivation.

Indexed as

Acinar cellsEpithelial differentiationGenome-wide screeningMucousSerousTerminal buds

Identifiers

PMID29934934
OpenAlexW2809504520

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.