Evidence map›Paper›PMID 29934816›Full record

ArticleGenes & genomics2018

Whole-exome sequencing analysis reveals co-segregation of a COL20A1 missense mutation in a Pakistani family with striate palmoplantar keratoderma.

Muhammad Ismail Khan, Soyeon Choi, Muhammad Zahid, Habib Ahmad, Roshan Ali, Musharraf Jelani, Changsoo Kang

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In one paragraph

Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Muhammad Ismail KhanDepartment of Zoology, Islamia College University, Peshawar, Pakistan.
Soyeon ChoiDepartment of Biology, Sungshin Women's University, Seoul, Republic of Korea.
Muhammad ZahidDepartment of Zoology, Islamia College University, Peshawar, Pakistan.
Habib AhmadDepartment of Zoology, Islamia College University, Peshawar, Pakistan.
Roshan AliDepartment of Molecular Biology and Genetics, Institute of Basic Medical Sciences, Khyber Medical University, Peshawar, Pakistan.
Musharraf JelaniDepartment of Genetic Medicine, Faculty of Medicine and Princess Al-Jawhara Albrahim Center of Excellence in Research of Hereditary Disorders, King Abdulaziz University, Jeddah, 21589, Saudi Arabia. mjelani@kau.edu.sa.
Changsoo KangDepartment of Biology, Sungshin Women's University, Seoul, Republic of Korea. ckang@sungshin.ac.kr.ORCID 0000-0003-1854-9491
Islamia College University · PKSungshin Women's University · KRKhyber Medical University · PKKing Abdulaziz University · SA

Funding

Sungshin Women`s University 2016-1-11-049/1
6 · The paper itself

Abstract

Palmoplantar keratoderma (PPK) is a rare group of excessive skin disorder characterized by thickness over the palms and soles. The striate palmoplantar keratoderma (PPKS) is a form in which hyperkeratotic lesions are restricted to the pressure regions extending longitudinally in the length of each finger to the palm. Dominantly inherited mutations in genes including desmoglein 1, desmoplakin and keratin 1 have been suggested as genetic causes of PPKS. In this study, we investigated a three-generation Pakistani family segregating PPKS phenotype in autosomal dominant fashion to identify genetic cause in this family. We have performed whole-exome and Sanger sequencing followed by in silico bioinformatics analysis to pinpoint candidate mutation associated with PPK. Revealed a novel heterozygous mutation (NM_020882.2, COL20A1 c. 392C > G; p.Ser131Cys) in the loop region close to fibronectin type III-1 domain of the c ollagen 20 α1. This variant was not found in our in-house 219 ethnically matched Pakistani unaffected controls and showed minor allele frequency of 3.4 × 10

Indexed as

Exome SequencingCollagenComputational BiologyFemaleHeterozygoteHumansKeratoderma, PalmoplantarMaleMutation, MissensePedigreeCollagenCOL20A1Exome sequencingMutationsPakistani familyPalmoplantar keratodermaPPKS

Identifiers

PMID29934816
OpenAlexW2801279016

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.