Evidence map›Paper›PMID 29934810›Full record

ArticleGenes & genomics2018

Transcriptome analysis of differentially expressed genes in rabbits' ovaries by digital gene-expression profiling.

Tao Huang, Ya-Dong Wang, Ming-Ming Xue, Xue Feng, Cai-Xia Sun, An-Si Wang, Shu-Yu Xie, Meng Zhang, Gui-Rong Sun, Ming Li

Abstract read
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In one paragraph

Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Tao HuangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Ya-Dong WangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Ming-Ming XueCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Xue FengCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Cai-Xia SunCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
An-Si WangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Shu-Yu XieCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Meng ZhangCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Gui-Rong SunCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China.
Ming LiCollege of Animal Science and Veterinary Medicine, Henan Agricultural University, Wenhua Road 95, Zhengzhou, 450002, People's Republic of China. 723414196@qq.com.
Henan Agricultural University · CN

Funding

Modern Agricultural Industry Technology System of Henan Province 30600543
6 · The paper itself

Abstract

Reproduction is a complex physiological process that is regulated by multiple genes and pathways. Compared with studies of common livestock, fewer studies of genes related to the fertility of rabbits (Oryctolagus cuniculus) have been reported, and the molecular mechanism of their high productivity is still poorly understood. To identify candidate genes associated with development and prolificacy in rabbits, we analyzed gene expression differences among the ovaries of mature Californian rabbit (LC), and mature (HH) and immature Harbin white rabbit (IH) using digital gene expression technology. We detected 885 and 321 genes that were significantly differentially expressed in comparisons between HH/IH and HH/LC, respectively. The functions of the differentially expressed genes (DEGs) were determined by GO classification and KEGG pathway analysis. The results suggest that most of the DEGs between the mature and immature developmental stages were predominantly associated with DNA replication, cell cycle, and progesterone-mediated oocyte maturation, and most were up-regulated in the IH group compared with the HH group. The DEGs involved in disparate fecundities between HH and LC were associated with reproduction, fructose and mannose metabolism, steroid hormone biosynthesis, and pyruvate metabolism. Our results will contribute to a better understanding of changes in the regulatory network in ovary at different developmental stages and in different fertility of rabbit.

Indexed as

AnimalsFemaleFertilityGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksHigh-Throughput Nucleotide SequencingMicroarray AnalysisOogenesisOvaryRabbitsReproductionTranscriptomeGene expressionOvaryRabbitReproduction

Identifiers

PMID29934810
OpenAlexW2791433921

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.