Evidence map›Paper›PMID 29932944›Full record

ArticleJournal of molecular biology2018

Biliverdin Reductase B Dynamics Are Coupled to Coenzyme Binding.

Natasia Paukovich, Mengjun Xue, James R Elder, Jasmina S Redzic, Ashley Blue, Hamish Pike, Brian G Miller, Todd M Pitts, David D Pollock, Kirk Hansen and 2 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Natasia PaukovichDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Mengjun XueDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
James R ElderDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Jasmina S RedzicDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Ashley BlueNational High Magnetic Field Laboratory, Tallahassee, FL 32310, USA.
Hamish PikeDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Brian G MillerDepartment of Chemistry & Biochemistry, Florida State University, Tallahassee, FL 32310, USA.
Todd M PittsDivision of Medical Oncology, School of Medicine, Aurora, CO 80045, USA.
David D PollockDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Kirk HansenDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Angelo D'AlessandroDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA.
Elan Zohar EisenmesserDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado Denver, School of Medicine, Aurora, CO 80045, USA. Electronic address: Elan.Eisenmesser@ucdenver.edu.
University of Colorado Denver · USFlorida State University · USNational High Magnetic Field Laboratory · USThe Medical Center of Aurora · US

Funding

Enzyme Regulation by Intrinsic DynamicsR01GM115388 · NIGMS · FLORIDA STATE UNIVERSITY · PI MILLER, BRIAN GENE · 2016 to 2019
$1.4M
Combining chemical shift-based and experimental approaches to study enzyme dynamiR01GM107262 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI EISENMESSER, ELAN Z · 2014 to 2017
$1.2M
NIGMS NIH HHS R01 GM107262NIGMS NIH HHS R01 GM115388
6 · The paper itself

Abstract

Biliverdin reductase B (BLVRB) is a newly identified cellular redox regulator that catalyzes the NADPH-dependent reduction of multiple substrates. Through mass spectrometry analysis, we identified high levels of BLVRB in mature red blood cells, highlighting the importance of BLVRB in redox regulation. The BLVRB conformational changes that occur during conezyme/substrate binding and the role of dynamics in BLVRB function, however, remain unknown. Through a combination of NMR, kinetics, and isothermal titration calorimetry studies, we determined that BLVRB binds its coenzyme 500-fold more tightly than its substrate. While the active site of apo BLVRB is highly dynamic on multiple timescales, active site dynamics are largely quenched within holo BLVRB, in which dynamics are redistributed to other regions of the enzyme. We show that a single point mutation of Arg78➔Ala leads to both an increase in active site micro-millisecond motions and an increase in the microscopic rate constants of coenzyme binding. This demonstrates that altering BLVRB active site dynamics can directly cause a change in functional characteristics. Our studies thus address the solution behavior of apo and holo BLVRB and identify a role of enzyme dynamics in coenzyme binding.

Indexed as

Binding SitesCatalytic DomainCoenzymesFlavin-Adenine DinucleotideMagnetic Resonance SpectroscopyModels, MolecularMutationNADPOxidoreductases Acting on CH-CH Group DonorsProtein ConformationStructure-Activity Relationshipbiliverdin reductaseCoenzymesFlavin-Adenine DinucleotideNADPOxidoreductases Acting on CH-CH Group Donorscoenzymedynamicsenzymenetworknuclear magnetic resonance

Identifiers

PMID29932944
PMCPMC6431292
OpenAlexW2809039065

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.