Evidence map›Paper›PMID 29931535›Full record

ArticleMolecular biology reports2018

Genome survey sequencing of red swamp crayfish Procambarus clarkii.

Linlin Shi, Shaokui Yi, Yanhe Li

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 44 citations in OpenAlex.

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  7. High-Quality Chromosome-Level Genome Assembly of the Corsac Fox (International journal of molecular sciences · 2023
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  16. Genome Survey of Male and Female Spotted Scat (Animals : an open access journal from MDPI · 2019
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  17. A First Insight into a Draft Genome of Silver Sillago (Animals : an open access journal from MDPI · 2019
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Linlin ShiCollege of Fisheries, Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.ORCID http://orcid.org/0000-0002-0002-4518
Shaokui YiAquaculture Genetics and Breeding Laboratory, The Ohio State University South Centers, 1864 Shyville Road, Piketon, OH, 45661, USA.ORCID http://orcid.org/0000-0003-2325-0179
Yanhe LiCollege of Fisheries, Key Lab of Freshwater Animal Breeding, Ministry of Agriculture, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China. liyanhe@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0001-6451-4527
Huazhong Agricultural University · CNThe Ohio State University · US

Funding

Fundamental Research Funds for the Central Universities 2662016QD009National Natural Science Foundation of China 31501858
6 · The paper itself

Abstract

Red swamp crayfish, Procambarus clarkii, presently is an important aquatic commercial species in China. The crayfish is a hot area of research focus, and its genetic improvement is quite urgent for the crayfish aquaculture in China. However, the knowledge of its genomic landscape is limited. In this study, a survey of P. clarkii genome was investigated based on Illumina's Solexa sequencing platform. Meanwhile, its genome size was estimated using flow cytometry. Interestingly, the genome size estimated is about 8.50 Gb by flow cytometry and 1.86 Gb with genome survey sequencing. Based on the assembled genome sequences, total of 136,962 genes and 152,268 exons were predicted, and the predicted genes ranged from 150 to 12,807 bp in length. The survey sequences could help accelerate the progress of gene discovery involved in genetic diversity and evolutionary analysis, even though it could not successfully applied for estimation of P. clarkii genome size.

Indexed as

AnimalsAstacoideaBase SequenceChinaChromosome MappingGene Expression ProfilingGenomeGenome-Wide Association StudyGenome sizeGenome survey sequenceIllumina sequencingProcambarus clarkii

Identifiers

PMID29931535
OpenAlexW2809193362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.