Evidence map›Paper›PMID 29931534›Full record

ArticleMolecular biology reports2018

Identification of NBS-encoding genes linked to black rot resistance in cabbage (Brassica oleracea var. capitata).

Khandker Shazia Afrin, Md Abdur Rahim, Jong-In Park, Sathishkumar Natarajan, Hoy-Taek Kim, Ill-Sup Nou

Abstract read
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Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Analysis ofPlants (Basel, Switzerland) · 2022
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Influence of Genotype on High Glucosinolate Synthesis Lines ofInternational journal of molecular sciences · 2021
    Article
  10. Review
  11. Article
  12. Review
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  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Khandker Shazia AfrinDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea.
Md Abdur RahimDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea.
Jong-In ParkDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea.
Sathishkumar NatarajanDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea.
Hoy-Taek KimDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea.
Ill-Sup NouDepartment of Horticulture, Sunchon National University, Suncheon, 57922, Republic of Korea. nis@sunchon.ac.kr.
Sunchon National University · KR

Funding

The Golden Seed Project (Center for Horticultural Seed Development) of the Ministry of Agriculture, Food and Rural affairs in the Republic of Korea (MAFRA) Grant no. 213007-05-2-CG100
6 · The paper itself

Abstract

Heading cabbage is a nutritionally rich and economically important cruciferous vegetable. Black rot disease, caused by the bacterium Xanthomonas campestris pv. campestris, reduces both the yield and quality of the cabbage head. Nucleotide binding site (NBS)-encoding resistance (R) genes play a vital role in the plant immune response to various pathogens. In this study, we analyzed the expression and DNA sequence variation of 31 NBS-encoding genes in cabbage (Brassica oleracea var. capitata). These genes encoded TIR, NBS, LRR and RPW8 protein domains, all of which are known to be involved in disease resistance. RNA-seq revealed that these 31 genes were differentially expressed in leaf, root, silique, and stem tissues. Furthermore, qPCR analyses revealed that several of these genes were more highly expressed in resistant compared to susceptible cabbage lines, including Bol003711, Bol010135, Bol010559, Bol022784, Bol029866, Bol042121, Bol031422, Bol040045 and Bol042095. Further analysis of these genes promises to yield both practical benefits, such as molecular markers for marker-assisted breeding, and fundamental insights to the mechanisms of resistance to black rot in cabbage.

Indexed as

Disease ResistanceBrassicaGene Expression ProfilingGene Expression Regulation, PlantGenetic MarkersPlant BreedingPlant DiseasesPlant LeavesPlant ProteinsPlant RootsPlant StemsSequence Analysis, RNAXanthomonas campestrisGenetic MarkersPlant ProteinsBlack rotCabbageExpressionNBS-encoding genesResistance

Identifiers

PMID29931534
OpenAlexW2809437082

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.