Evidence map›Paper›PMID 29931343›Full record

ArticleHuman molecular genetics2018

Consortium-based genome-wide meta-analysis for childhood dental caries traits.

Simon Haworth, Dmitry Shungin, Justin T van der Tas, Strahinja Vucic, Carolina Medina-Gomez, Victor Yakimov, Bjarke Feenstra, John R Shaffer, Myoung Keun Lee, Marie Standl and 33 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 5 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 5 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
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  6. Review
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  14. Bacterial community modifies host genetics effect on early childhood caries.medRxiv : the preprint server for health sciences · 2023
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  19. Article
  20. The Most Common Vitamin D Receptor Polymorphisms (Children (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 19 institutions in 8 countries.

Simon HaworthMedical Research Council Integrative Epidemiology Unit at Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Dmitry ShunginDepartment of Odontology, Umeå University, Umeå 901 87, Sweden.
Justin T van der TasDepartment of Oral and Maxillofacial Surgery, Special Dental Care and Orthodontics.
Strahinja VucicDepartment of Oral and Maxillofacial Surgery, Special Dental Care and Orthodontics.
Carolina Medina-GomezThe Generation R Study Group.
Victor YakimovDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen DK-2300, Denmark.
Bjarke FeenstraDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen DK-2300, Denmark.
John R ShafferDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Myoung Keun LeeCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Marie StandlInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg D-85764, Germany.
Elisabeth ThieringInstitute of Epidemiology I, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg D-85764, Germany.
Carol WangDivision of Obstetrics and Gynaecology, The University of Western Australia, Perth WA 6009, Australia.
Klaus BønnelykkeCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofe Hospital, University of Copenhagen, Copenhagen 2730, Denmark.
Johannes WaageCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofe Hospital, University of Copenhagen, Copenhagen 2730, Denmark.
Leon Eyrich JessenCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofe Hospital, University of Copenhagen, Copenhagen 2730, Denmark.
Pia Elisabeth NørrisgaardCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofe Hospital, University of Copenhagen, Copenhagen 2730, Denmark.
Raimo JoroInstitute of Biomedicine, School of Medicine, University of Eastern Finland Kuopio Campus, 70211 Kuopio, Finland.
Ilkka SeppäläDepartment of Clinical Chemistry, Fimlab Laboratories and Finnish Cardiovascular Research Center Tampere - Faculty of Medicine and Life Sciences, University of Tampere, Tampere 33520, Finland.
Olli RaitakariDepartment of Clinical Physiology and Nuclear Medicine, Turku University Hospital, Turku 20520, Finland.
Tom DuddingMedical Research Council Integrative Epidemiology Unit at Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
Olja GrgicDepartment of Oral and Maxillofacial Surgery, Special Dental Care and Orthodontics.
Edwin OngkosuwitoThe Generation R Study Group.
Anu VierolaInstitute of Biomedicine, School of Medicine, University of Eastern Finland Kuopio Campus, 70211 Kuopio, Finland.
Aino-Maija ElorantaInstitute of Biomedicine, School of Medicine, University of Eastern Finland Kuopio Campus, 70211 Kuopio, Finland.
Nicola X WestBristol Dental School, University of Bristol, Bristol BS1 2LY, UK.
Steven J ThomasBristol Dental School, University of Bristol, Bristol BS1 2LY, UK.
Daniel W McNeilDepartment of Psychology, Eberly College of Arts and Sciences, West Virginia University, Morgantown, WA 26506-6286, USA.
Steven M LevyDepartment of Preventive and Community Dentistry, College of Dentistry, University of Iowa, Cedar Rapids, IA 52242-1010, USA.
Rebecca SlaytonDepartment of Pediatric Dentistry (Retired), School of Dentistry, University of Washington, Seattle, WA 98195, USA.
Ellen A NohrResearch Unit for Gynaecology and Obstetrics, Department of Clinical Research, University of Southern Denmark, Odense 5000, Denmark.
Terho LehtimäkiDepartment of Clinical Chemistry, Fimlab Laboratories and Finnish Cardiovascular Research Center Tampere - Faculty of Medicine and Life Sciences, University of Tampere, Tampere 33520, Finland.
Timo LakkaInstitute of Biomedicine, School of Medicine, University of Eastern Finland Kuopio Campus, 70211 Kuopio, Finland.
Hans BisgaardCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofe Hospital, University of Copenhagen, Copenhagen 2730, Denmark.
Craig PennellDivision of Obstetrics and Gynaecology, The University of Western Australia, Perth WA 6009, Australia.
Jan KühnischDepartment of Conservative Dentistry and Periodontology, University Hospital, Ludwig-Maximilians-Universität München, Munich 80336, Germany.
Mary L MarazitaDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.
Mads MelbyeDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen DK-2300, Denmark.
Frank GellerDepartment of Epidemiology Research, Statens Serum Institut, Copenhagen DK-2300, Denmark.
Fernando RivadeneiraThe Generation R Study Group.
Eppo B WolviusDepartment of Oral and Maxillofacial Surgery, Special Dental Care and Orthodontics.
Paul W FranksDepartment of Clinical Sciences, Genetic and Molecular Epidemiology Unit, Lund University, Malmö 202 13, Sweden.
Ingegerd JohanssonDepartment of Odontology, Umeå University, Umeå 901 87, Sweden.
Nicholas J TimpsonMedical Research Council Integrative Epidemiology Unit at Bristol Medical School, University of Bristol, Bristol BS8 2BN, UK.
University of Copenhagen · DKStatens Serum Institut · DKUniversity of Eastern Finland · FIUniversity of Bristol · GBUniversity of Pittsburgh · USErasmus MC · NLHelmholtz Zentrum München · DETampere University · FIThe University of Western Australia · AUUniversity Of Bristol Dental Hospital · GBBroad Institute · USHarvard University · USLudwig-Maximilians-Universität München · DEUmeå University · SEUniversity of Iowa · USUniversity of Southern Denmark · DKUniversity of Turku · FIUniversity of Washington · USWest Virginia University · US

Funding

Psychosocial Influences on Rural Children's Oral HealthR01DE014899 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FOXMAN, BETSY, MARAZITA, MARY L. · 2002 to 2020
$39.9M
Fluoride & Other Factors in Childhood and Adolescent Bone DevelopmentR01DE012101 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1998 to 2013
$11.9M
THERMAL ASSEMBLY OF MINERAL/COLLAGEN BIOMATERIALSP60DE013076 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1999 to 2003
$8.4M
LONGITUDINAL STUDY OF FLUORIDE EXPOSURES &FLUORIDER01DE009551 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1991 to 2008
$4.7M
Dental Caries: Whole Genome Association and Gene x Environment StudiesU01DE018903 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L. · 2007 to 2010
$1.2M
Modeling childhood dental caries patterns for genomic and epigenetic analysisR03DE024264 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHAFFER, JOHN R · 2015 to 2016
$462k
CIHR MOP-82893Medical Research Council MC_UU_12013/3NHGRI NIH HHS HHSN268200782096CNIDCR NIH HHS P60 DE013076NIDCR NIH HHS R01 DE009551NIDCR NIH HHS R01 DE012101NIDCR NIH HHS R01 DE014899NIDCR NIH HHS R03 DE024264NIDCR NIH HHS U01 DE018903Wellcome TrustWellcome Trust 076467/Z/05/ZWellcome Trust 201237/Z/16/ZWellcome Trust 202802/Z/16/Z
6 · The paper itself

Abstract

Prior studies suggest dental caries traits in children and adolescents are partially heritable, but there has been no large-scale consortium genome-wide association study (GWAS) to date. We therefore performed GWAS for caries in participants aged 2.5-18.0 years from nine contributing centres. Phenotype definitions were created for the presence or absence of treated or untreated caries, stratified by primary and permanent dentition. All studies tested for association between caries and genotype dosage and the results were combined using fixed-effects meta-analysis. Analysis included up to 19 003 individuals (7530 affected) for primary teeth and 13 353 individuals (5875 affected) for permanent teeth. Evidence for association with caries status was observed at rs1594318-C for primary teeth [intronic within ALLC, odds ratio (OR) 0.85, effect allele frequency (EAF) 0.60, P 4.13e-8] and rs7738851-A (intronic within NEDD9, OR 1.28, EAF 0.85, P 1.63e-8) for permanent teeth. Consortium-wide estimated heritability of caries was low [h2 of 1% (95% CI: 0%: 7%) and 6% (95% CI 0%: 13%) for primary and permanent dentitions, respectively] compared with corresponding within-study estimates [h2 of 28% (95% CI: 9%: 48%) and 17% (95% CI: 2%: 31%)] or previously published estimates. This study was designed to identify common genetic variants with modest effects which are consistent across different populations. We found few single variants associated with caries status under these assumptions. Phenotypic heterogeneity between cohorts and limited statistical power will have contributed; these findings could also reflect complexity not captured by our study design, such as genetic effects which are conditional on environmental exposure.

Indexed as

Dentition, PermanentPolymorphism, Single NucleotideQuantitative Trait LociAdaptor Proteins, Signal TransducingAdolescentBiomarkersCase-Control StudiesChildChild, PreschoolDental CariesFemaleGenome-Wide Association StudyHumansMalePhenotypePhosphoproteinsAdaptor Proteins, Signal TransducingBiomarkersNEDD9 protein, humanPhosphoproteins

Identifiers

PMID29931343
PMCPMC6097157
OpenAlexW2784696894

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.