Evidence map›Paper›PMID 29931259›Full record

ArticleNucleic acids research2018

Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle.

Brendan Wilcox, Ilya Osterman, Marina Serebryakova, Dmitry Lukyanov, Ekaterina Komarova, Bridget Gollan, Natalia Morozova, Yuri I Wolf, Kira S Makarova, Sophie Helaine and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Brendan WilcoxCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Ilya OstermanCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Marina SerebryakovaCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Dmitry LukyanovLomonosov Moscow State University, A.N. Belozersky Institute of Physico-Chemical Biology, Moscow 119992, Russia.
Ekaterina KomarovaCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Bridget GollanMRC Centre for Molecular Bacteriology and Infection, Flowers Building, Armstrong Road, Imperial College London, London SW7 2AZ, UK.
Natalia MorozovaCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Yuri I WolfNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA.
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA.
Sophie HelaineMRC Centre for Molecular Bacteriology and Infection, Flowers Building, Armstrong Road, Imperial College London, London SW7 2AZ, UK.
Petr SergievCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Svetlana DubileyCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Sergei BorukhovDepartment of Cell Biology, Rowan University School of Osteopathic Medicine at Stratford, Stratford, NJ 08084-1489, USA.
Konstantin SeverinovCentre for Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo 143025, Russia.
Skolkovo Institute of Science and Technology · RUImperial College London · GBInstitute of Gene Biology · RULomonosov Moscow State University · RUNational Center for Biotechnology Information · USRowan University · US

Funding

Medical Research Council MR/M009629/1Medical Research Council MR/P028225/1
6 · The paper itself

Abstract

Prokaryotic toxin-antitoxin (TA) modules are highly abundant and are involved in stress response and drug tolerance. The most common type II TA modules consist of two interacting proteins. The type II toxins are diverse enzymes targeting various essential intracellular targets. The antitoxin binds to cognate toxin and inhibits its function. Recently, TA modules whose toxins are GNAT-family acetyltransferases were described. For two such systems, the target of acetylation was shown to be aminoacyl-tRNA: the TacT toxin targets aminoacylated elongator tRNAs, while AtaT targets the amino acid moiety of initiating tRNAMet. We show that the itaRT gene pair from Escherichia coli encodes a TA module with acetyltransferase toxin ItaT that specifically and exclusively acetylates Ile-tRNAIle thereby blocking translation and inhibiting cell growth. ItaT forms a tight complex with the ItaR antitoxin, which represses the transcription of itaRT operon. A comprehensive bioinformatics survey of GNAT acetyltransferases reveals that enzymes encoded by validated or putative TA modules are common and form a distinct branch of the GNAT family tree. We speculate that further functional analysis of such TA modules will result in identification of enzymes capable of specifically targeting many, perhaps all, aminoacyl tRNAs.

Indexed as

AcetylationAcetyltransferasesAntitoxinsBacterial ToxinsEscherichia coli ProteinsProtein BiosynthesisProtein Processing, Post-TranslationalRNA, Transfer, IleRNA, Transfer, MetAcetyltransferasesAntitoxinsBacterial ToxinsEscherichia coli ProteinsRNA, Transfer, IleRNA, Transfer, Met

Identifiers

PMID29931259
PMCPMC6125619
OpenAlexW2809369434

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.