ArticleBioinformatics (Oxford, England)2019
htsget: a protocol for securely streaming genomic data.
Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed.
- The European Health Data Space and biobanking in Europe: synergies, tensions and the future governance of data-driven health research.Frontiers in genetics · 2026Review
- Analysis-ready VCF at Biobank scale using Zarr.bioRxiv : the preprint server for biology · 2025Article
- Analysis-ready VCF at Biobank scale using Zarr.GigaScience · 2025Article
- Rakeiora Genomics Platform: a pathfinder for genomic medicine research in Aotearoa New Zealand.Journal of the Royal Society of New Zealand · 2025Article
- Article
- A general and efficient representation of ancestral recombination graphs.bioRxiv : the preprint server for biology · 2024Article
- Remote visualization of large-scale genomic alignments for collaborative clinical research and diagnosis of rare diseases.Cell genomics · 2023Article
- Implementation of Privacy and Security for a Genomic Information System Based on Standards.Journal of personalized medicine · 2022Article
- The European Variation Archive: a FAIR resource of genomic variation for all species.Nucleic acids research · 2022Article
- The European Genome-phenome Archive in 2021.Nucleic acids research · 2022Article
- CanDIG: Federated network across Canada for multi-omic and health data discovery and analysis.Cell genomics · 2021Article
- GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell genomics · 2021Article
- Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit.GigaScience · 2021Article
- HTSlib: C library for reading/writing high-throughput sequencing data.GigaScience · 2021Article
- FHIR Genomics: enabling standardization for precision medicine use cases.NPJ genomic medicine · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
17 authors.
Funding
Abstract
Summary: Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data sharing. We have developed htsget, a protocol for secure, efficient and reliable access to sequencing read and variation data. We demonstrate four independent client and server implementations, and the results of a comprehensive interoperability demonstration. Availability and implementation: http://samtools.github.io/hts-specs/htsget.html. Supplementary information: Supplementary data are available at Bioinformatics online.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.