Evidence map›Paper›PMID 29930334›Full record

ArticleScientific reports2018

Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient.

Mamadou Beye, Issam Hasni, Piseth Seng, Caroline Michelle, Bernard La Scola, Didier Raoult, Pierre-Edouard Fournier

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  5. Isolation ofAccess microbiology · 2022
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  7. Case Report: Multidrug ResistantFrontiers in veterinary science · 2021
    Article
  8. Article
  9. Emergence of Colistin Resistance GeneFrontiers in microbiology · 2019
    Article
  10. Emergence of NDM-1- and CTX-M-3-ProducingFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mamadou BeyeAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.
Issam HasniAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.
Piseth SengAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.ORCID 0000-0002-0300-2728
Caroline MichelleAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.
Bernard La ScolaAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.
Didier RaoultAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France.
Pierre-Edouard FournierAix-Marseille Univ, IRD, AP-HM, SSA, VITROME, IHU Méditerranée-infection, Marseille, France. pierre-edouard.fournier@univ-amu.fr.ORCID 0000-0001-8463-8885
Méditerranée Infection Foundation · FRAix-Marseille Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We sequenced the genome of Raoultella ornithinolytica strain Marseille-P1025 that caused a rare case of prosthetic joint infection in a 67-year-old immunocompetent male. The 6.7-Mb genome exhibited a genomic island (RoGI) that was unique among R. ornithinolytica strains. RoGI was likely acquired by lateral gene transfer from a member of the Pectobacterium genus and coded for a type IVa secretion system found in other pathogenic bacteria and that may have conferred strain Marseille-P1025 an increased virulence. Strain Marseille-P1025 was also able to infect, multiply within, and kill Acanthamoaeba castellanii amoebae.

Indexed as

Genome, BacterialAgedEnterobacteriaceaeEnterobacteriaceae InfectionsGene Transfer, HorizontalGenomic IslandsHumansJoint ProsthesisMalePhylogenyProsthesis-Related Infections

Identifiers

PMID29930334
PMCPMC6013458
OpenAlexW2807718447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.