Evidence map›Paper›PMID 29930094›Full record

ArticleScience (New York, N.Y.)2018

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.

Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 859 papers.

0numbers the graph read from it
0cells of the map it votes in
859citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

859 citing papers in PubMed.

  1. Article
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  13. The CTNNB1-TRIM28 complex governs hormone-induced RNA polymerase II dynamics in kidney epithelial cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. 3D Genome Engineering Using CRISPR/dCas Systems.International journal of molecular sciences · 2026
    Review
  15. Review
  16. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
    Review
  17. Article
  18. Article
  19. Review
  20. Review

799 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Won-Ki ChoDepartment of Physics, MIT, Cambridge, MA 02139, USA.ORCID 0000-0001-9336-0686
Jan-Hendrik SpilleDepartment of Physics, MIT, Cambridge, MA 02139, USA.ORCID 0000-0001-8493-4721
Micca HechtDepartment of Physics, MIT, Cambridge, MA 02139, USA.ORCID 0000-0002-0057-1554
Choongman LeeDepartment of Physics, MIT, Cambridge, MA 02139, USA.
Charles LiDepartment of Biology, MIT, Cambridge, MA 02139, USA.ORCID 0000-0001-8091-6112
Valentin GrubeDepartment of Physics, MIT, Cambridge, MA 02139, USA.
Ibrahim I CisseDepartment of Physics, MIT, Cambridge, MA 02139, USA.ORCID 0000-0002-8764-1809

Funding

Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
IMAGING TRANSCRIPTION WITH SINGLE MOLECULE RESOLUTION IN LIVE MAMMALIAN CELLSDP2CA195769 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CISSE, IBRAHIM · 2014 to 2014
$2.3M
NCI NIH HHS DP2 CA195769NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

Models of gene control have emerged from genetic and biochemical studies, with limited consideration of the spatial organization and dynamics of key components in living cells. We used live-cell superresolution and light-sheet imaging to study the organization and dynamics of the Mediator coactivator and RNA polymerase II (Pol II) directly. Mediator and Pol II each form small transient and large stable clusters in living embryonic stem cells. Mediator and Pol II are colocalized in the stable clusters, which associate with chromatin, have properties of phase-separated condensates, and are sensitive to transcriptional inhibitors. We suggest that large clusters of Mediator, recruited by transcription factors at large or clustered enhancer elements, interact with large Pol II clusters in transcriptional condensates in vivo.

Indexed as

Gene Expression RegulationTranscription, GeneticAnimalsCells, CulturedChromatinEmbryonic Stem CellsEnhancer Elements, GeneticLuminescent ProteinsMediator ComplexMiceMolecular ImagingRNA Polymerase IITranscription FactorsChromatinDendra2 protein, DendronephthyaLuminescent ProteinsMediator ComplexRNA Polymerase IITranscription Factors

Identifiers

PMID29930094
PMCPMC6543815

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.