Evidence map›Paper›PMID 29930091›Full record

ArticleScience (New York, N.Y.)2018

Coactivator condensation at super-enhancers links phase separation and gene control.

Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga and 13 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,536 papers.

0numbers the graph read from it
0cells of the map it votes in
1,536citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,536 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

1,476 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Benjamin R SabariWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0002-6411-3907
Alessandra Dall'AgneseWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0001-9654-371X
Ann BoijaWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0003-4659-9154
Isaac A KleinWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0002-6032-239X
Eliot L CoffeyWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Krishna ShrinivasDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-4167-9385
Brian J AbrahamWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0001-8085-3027
Nancy M HannettWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Alicia V ZamudioWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
John C ManteigaWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0002-0385-6176
Charles H LiWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0001-8091-6112
Yang E GuoWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Daniel S DayWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Jurian SchuijersWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Eliza VasileKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-8272-658X
Sohail MalikLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0001-8907-1750
Denes HniszWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.ORCID 0000-0002-6256-1693
Tong Ihn LeeWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA.
Ibrahim I CisseDepartment of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-8764-1809
Robert G RoederLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0003-3865-8572
Phillip A SharpDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0003-1465-1691
Arup K ChakrabortyDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0003-1268-9602
Richard A YoungWhitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA. young@wi.mit.edu.ORCID 0000-0001-8855-8647

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
USE OF RETROVIRUS PROMOTER TRAP VECTORS TO IDENTIFY ONCOGENES AND ANTI-ONCOGENESP01CA042063 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI JACKS, TYLER E. · 1986 to 2021
$30.5M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
Nuclear Receptor Coactivator Functions and MechanismsR01DK071900 · NIDDK · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2005 to 2015
$5.9M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Transcriptional regulatory networks in living cellsR01GM123511 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2017 to 2020
$3.6M
Transcriptional regulatory mechanisms in B cell development and leukemogenesisR01CA178765 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2013 to 2017
$2.8M
NCI NIH HHS P01 CA042063NCI NIH HHS P30 CA014051NCI NIH HHS R01 CA178765NCI NIH HHS T32 CA009172NIDDK NIH HHS R01 DK071900NIGMS NIH HHS R01 GM123511NIGMS NIH HHS T32 GM007287NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

Super-enhancers (SEs) are clusters of enhancers that cooperatively assemble a high density of the transcriptional apparatus to drive robust expression of genes with prominent roles in cell identity. Here we demonstrate that the SE-enriched transcriptional coactivators BRD4 and MED1 form nuclear puncta at SEs that exhibit properties of liquid-like condensates and are disrupted by chemicals that perturb condensates. The intrinsically disordered regions (IDRs) of BRD4 and MED1 can form phase-separated droplets, and MED1-IDR droplets can compartmentalize and concentrate the transcription apparatus from nuclear extracts. These results support the idea that coactivators form phase-separated condensates at SEs that compartmentalize and concentrate the transcription apparatus, suggest a role for coactivator IDRs in this process, and offer insights into mechanisms involved in the control of key cell-identity genes.

Indexed as

Enhancer Elements, GeneticGene Expression RegulationAnimalsBromodomain Containing ProteinsCell NucleusConserved SequenceEmbryonic Stem CellsFluorescence Recovery After PhotobleachingGlycolsHEK293 CellsHumansImmunoprecipitationIntrinsically Disordered ProteinsMediator Complex Subunit 1MiceMolecular ImagingBrd4 protein, mouseBromodomain Containing ProteinsGlycolshexamethylene glycolIntrinsically Disordered ProteinsMed1 protein, mouseMediator Complex Subunit 1Nuclear ProteinsSerineTrans-ActivatorsTranscription Factors

Identifiers

PMID29930091
PMCPMC6092193

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.