Evidence map›Paper›PMID 29930090›Full record

ArticleScience (New York, N.Y.)2018

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.

Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq and 1 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 626 papers.

0numbers the graph read from it
0cells of the map it votes in
626citing papers in PubMed
44.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

626 citing papers in PubMed, 1,028 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. 3D Genome Engineering Using CRISPR/dCas Systems.International journal of molecular sciences · 2026
    Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Current Challenges of Transcription Compartmentalization Research.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  17. Article
  18. Article
  19. Article
  20. Article

566 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Shasha ChongDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0002-5372-311X
Claire Dugast-DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-8602-3534
Zhe LiuJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Peng DongJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Gina M DaileyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Claudia CattoglioDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-6100-0491
Alec HeckertDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0001-8748-6645
Sambashiva BanalaJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
Luke LavisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-0789-6343
Xavier DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA.ORCID 0000-0003-2537-8395
Robert TjianDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA. jmlim@berkeley.edu.ORCID 0000-0003-0539-8217
Howard Hughes Medical Institute · USUniversity of California, Berkeley · US

Funding

Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB, MIRNY, LEONID A · 2015 to 2019
$14.9M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01EB021236 · NIBIB · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2015 to 2017
$2.5M
Stem Cell Engineering Training ProgramT32GM098218 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HEALY, KEVIN EDWARD, SCHAFFER, DAVID V · 2011 to 2020
$1.8M
Howard Hughes Medical InstituteNIBIB NIH HHS U01 EB021236NIDDK NIH HHS U54 DK107980NIGMS NIH HHS T32 GM098218
6 · The paper itself

Abstract

Many eukaryotic transcription factors (TFs) contain intrinsically disordered low-complexity sequence domains (LCDs), but how these LCDs drive transactivation remains unclear. We used live-cell single-molecule imaging to reveal that TF LCDs form local high-concentration interaction hubs at synthetic and endogenous genomic loci. TF LCD hubs stabilize DNA binding, recruit RNA polymerase II (RNA Pol II), and activate transcription. LCD-LCD interactions within hubs are highly dynamic, display selectivity with binding partners, and are differentially sensitive to disruption by hexanediols. Under physiological conditions, rapid and reversible LCD-LCD interactions occur between TFs and the RNA Pol II machinery without detectable phase separation. Our findings reveal fundamental mechanisms underpinning transcriptional control and suggest a framework for developing single-molecule imaging screens for drugs targeting gene regulatory interactions implicated in disease.

Indexed as

Protein Interaction Domains and MotifsTranscriptional ActivationTranscription, GeneticCell Line, TumorDNA-Binding ProteinsGenes, SyntheticHumansOperator Regions, GeneticProtein BindingRNA Polymerase IISingle Molecule ImagingTranscription FactorsDNA-Binding ProteinsRNA Polymerase IITranscription Factors

Identifiers

PMID29930090
PMCPMC6961784
OpenAlexW2808847099

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.