Evidence map›Paper›PMID 29929474›Full record

ArticleBMC plant biology2018

TM8 represses developmental timing in Nicotiana benthamiana and has functionally diversified in angiosperms.

Heleen Coenen, Tom Viaene, Michiel Vandenbussche, Koen Geuten

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Heleen CoenenDepartment of Biology, KU Leuven, Kasteelpark Arenberg 31, B-3001, Leuven, Belgium.
Tom ViaeneDepartment of Biology, KU Leuven, Kasteelpark Arenberg 31, B-3001, Leuven, Belgium.
Michiel VandenbusscheLaboratoire Reproduction et Développement des Plantes, University Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, F-69342, Lyon, France.
Koen GeutenDepartment of Biology, KU Leuven, Kasteelpark Arenberg 31, B-3001, Leuven, Belgium. koen.geuten@kuleuven.be.
KU Leuven · BEUniversité Claude Bernard Lyon 1 · FR

Funding

FWO G065713NIWT 35040KULeuven C24/17/037KULeuven OT/12/053
6 · The paper itself

Abstract

backgroundMADS-box genes are key regulators of plant reproductive development and members of most lineages of this gene family have been extensively studied. However, the function and diversification of the ancient TM8 lineage remains elusive to date. The available data suggest a possible function in flower development in tomato and fast evolution through numerous gene loss events in flowering plants.

resultsWe show the broad conservation of TM8 within angiosperms and find that in contrast to other MADS-box gene lineages, no gene duplicates have been retained after major whole genome duplication events. Through knock-down of NbTM8 by virus induced gene silencing in Nicotiana benthamiana, we show that NbTM8 represses miR172 together with another MADS-box gene, SHORT VEGETATIVE PHASE (NbSVP). In the closely related species Petunia hybrida, PhTM8 is not expressed under the conditions we investigated and consistent with this, a knock-out mutant did not show a phenotype. Finally, we generated transgenic tomato plants in which TM8 was silenced or ectopically expressed, but these plants did not display a clear phenotype. Therefore, no clear function could be confirmed for Solanum lycopersium.

conclusionsWhile the presence of TM8 is generally conserved, it remains difficult to propose a general function in angiosperms. Based on all the available data to date, supplemented with our own results, TM8 function seems to have diversified quickly throughout angiosperms and acts as repressor of miR172 in Nicotiana benthamiana, together with NbSVP.

Indexed as

Biological EvolutionConserved SequenceGenes, PlantMADS Domain ProteinsMagnoliopsidaNicotianaPetuniaPhylogenyPlant ProteinsTranscriptomeMADS Domain ProteinsPlant ProteinsNicotiana benthamianaOverexpressionPetunia hybridaRepressor of miR172RNAiSolanum lycopersiumSVPTM8VIGS

Identifiers

PMID29929474
PMCPMC6013966
OpenAlexW2809597017

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.