Evidence map›Paper›PMID 29927385›Full record

ArticleeLife2018

Computational design of thermostabilizing point mutations for G protein-coupled receptors.

Petr Popov, Yao Peng, Ling Shen, Raymond C Stevens, Vadim Cherezov, Zhi-Jie Liu, Vsevolod Katritch

Abstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. One-shot design elevates functional expression levels of a voltage-gated potassium channel.Protein science : a publication of the Protein Society · 2024
    Article
  3. Article
  4. Article
  5. Stabilization ofMembranes · 2023
    Article
  6. Article
  7. Article
  8. eGFP as an All-in-One Tag for Purification of Membrane Proteins.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Beyond sequence: Structure-based machine learning.Computational and structural biotechnology journal · 2023
    Review
  10. Review
  11. Review
  12. State-Targeting Stabilization of Adenosine AInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Petr PopovDepartment of Biological Sciences, University of Southern California, Los Angeles, Los Angeles, United States.
Yao PengiHuman Institute, ShanghaiTech University, Shanghai, China.
Ling SheniHuman Institute, ShanghaiTech University, Shanghai, China.
Raymond C StevensDepartment of Biological Sciences, University of Southern California, Los Angeles, Los Angeles, United States.
Vadim CherezovDepartment of Biological Sciences, University of Southern California, Los Angeles, Los Angeles, United States.
Zhi-Jie LiuiHuman Institute, ShanghaiTech University, Shanghai, China.
Vsevolod KatritchDepartment of Biological Sciences, University of Southern California, Los Angeles, Los Angeles, United States.ORCID 0000-0003-3883-4505

Funding

Structure-Function of Opioid ReceptorsP01DA035764 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROTH, BRYAN L., STEVENS, RAYMOND C · 2014 to 2018
$7.1M
NIDA NIH HHS P01 DA035764NIH HHS P01DA035764
6 · The paper itself

Abstract

Engineering of GPCR constructs with improved thermostability is a key for successful structural and biochemical studies of this transmembrane protein family, targeted by 40% of all therapeutic drugs. Here we introduce a comprehensive computational approach to effective prediction of stabilizing mutations in GPCRs, named CompoMug, which employs sequence-based analysis, structural information, and a derived machine learning predictor. Tested experimentally on the serotonin 5-HT

Indexed as

Machine LearningPoint MutationAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayGene ExpressionHumansKineticsModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein EngineeringProtein Interaction Domains and MotifsProtein StabilityReceptor, Serotonin, 5-HT2CSerotonin 5-HT2 Receptor AgonistsSerotonin 5-HT2 Receptor Antagonistscomputational biologyGPCRmachine learningmolecular biophysicsnonestabilizing mutationsstructural biologysystems biology

Identifiers

PMID29927385
PMCPMC6013254

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.