ArticleFunctional & integrative genomics2018
Identification, characterization, and expression analysis of auxin response factor (ARF) gene family in Brachypodium distachyon.
Article in Functional & integrative genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 25 citations in OpenAlex.
- Identification of theInternational journal of molecular sciences · 2025Article
- Identification of ARF gene family and functional analysis of CqARF05 under drought and salt stress in quinoa.Scientific reports · 2025Article
- Genome-wide characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Identification of ARF genes in Juglans Sigillata Dode and analysis of their expression patterns under drought stress.Molecular biology reports · 2024Article
- Identification of ARF genes in Cucurbita pepo L and analysis of expression patterns, and functional analysis of CpARF22 under drought, salt stress.BMC genomics · 2024Article
- Analysis of Auxin-Encoding Gene Family inPlants (Basel, Switzerland) · 2023Article
- Genome-Wide Identification and Expression Analysis of Auxin Response Factor Gene Family inInternational journal of molecular sciences · 2023Article
- Genome-wide characterization of ubiquitin-conjugating enzyme gene family explores its genetic effects on the oil content and yield ofFrontiers in plant science · 2023Article
- Systematic Identification and Expression Analysis of the Auxin Response Factor (ARF) Gene Family inInternational journal of molecular sciences · 2022Article
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- Genome-Wide Identification and Expression Analysis of the Aux/IAA and Auxin Response Factor Gene Family inInternational journal of molecular sciences · 2021Article
- Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses inInternational journal of molecular sciences · 2019Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
Abstract
Auxin response factors (ARFs) are one type of essential family of transcription factors that bind with auxin response elements (AuxRE), and play vital roles in variety of plant development and physiological processes. Brachypodium distachyon, related to the major cereal grain species, were recently developed to be a good model organism for functional genomics research. So far, genome-wide overview of the ARF gene family in B. distachyon was not available. Here, a systemic analysis of ARF gene family members in B. distachyon was performed. A comprehensive overview of the characterization of the BdARFs was obtained by multiple bioinformatics analyses, including the gene and protein structure, chromosome locations, conserved motifs of proteins, phylogenetic analysis, and cis-elements in promoters of BdARF. Results showed that all BdARFs contained conserved DBD, MR, and CTD could be divided into four classes, Ia, IIa, IIb, and III. Expression profiles of BdARF genes indicated that they were expressed across various tissues and organs, which could be clustered into three main expression groups, and most of BdARF genes were involved in phytohormone signal transduction pathways and regulated physiological process in responding to multiple environmental stresses. And predicted regulatory network between B. distachyon ARFs and IAAs was also discussed. Our genomics analysis of BdARFs could yield new insights into the complexity of the control of BdARF genes and lead to potential applications in the investigation of the accurate regulatory mechanisms of ARFs in herbaceous plants.
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